BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0090.1
(1362 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 281 2e-82
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 281 2e-82
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 274 5e-77
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 241 3e-69
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 212 8e-58
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 281 bits (718), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 175/514 (34%), Positives = 267/514 (51%), Gaps = 23/514 (4%)
Query: 656 ITHLCFADDLLVFMQGDSESATALQVVLVRLKQATGLGVNCDKSTMFWAGLGAEEKECCQ 715
ITHLCFADDLLVF G S + + + +GL ++ +KST++ AG+ +K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 716 SILGFQWGALPIRYLGLPLIASRLSYADCAPLIQKVQARIKSWKARYLSFAGRCLLVKAV 775
F GALP+RYLGLPL+ +++ +D PL++K++ RI W AR+LSFAGR L+ +V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 776 LSSMIIYWSSVFVLPQRVFKEIDSLFFRFLWAGVDLGLKRPAIRRQIACLPKEEGGLGIR 835
+ S+ +W S F LP KEIDS+ FLW+G +L K+ + C PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 836 SMQTLNDALNLRHVWDIVSGKDSLWARWVKRNLVKDKEFWVMKVPHDC-SWCWRKILGSR 894
S++ N L+ +W ++S SLW +W++ L++ FW + SW W+KIL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 895 EKAKFMICHQIGSGQSLKFWFDIWHPLGLLYEFLVENSRLASNFNTRALVSDFIRDGEWF 954
A + H I +G + FWFD W +G L + + A V++ + +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 955 IPPH--LLHILGDIVSSLHL-VTIGEVSVDRAIWLVGKYGD-----YTLKETYEHIRQRG 1006
H LL I I H +T GE D W GD + KET+ R+
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGE---DTVRW--KGNGDIFKPCFNTKETWAATREPK 361
Query: 1007 SKVPWKNLVWFSHSIPRHCFIGWVAMQRGLKTNLKLISWGMQVNSSCYLCSHEDESDFHL 1066
KV W VWFSH+ P++ + W+A++ L T +++SW +SSC LC H E+ HL
Sbjct: 362 LKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHL 421
Query: 1067 LFGCQFSISVWQELLKILDVYSPRFTD-WEHAVGWCIDQFSGS--TFSKRMGCLIFNGFI 1123
F C +S VW L + L S FT+ WE + ++ G F R F +
Sbjct: 422 FFTCPYSAEVWSTLTRKL--LSQHFTNRWEAILKLLTNKSLGHEVPFLTRY---TFQLTL 476
Query: 1124 YHVWRERNIRAFQKISRSPLSIVHEVLTELRIKV 1157
+ +W+ERN R ++ ++ +V + ++R ++
Sbjct: 477 HSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRI 510
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 281 bits (718), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 175/514 (34%), Positives = 267/514 (51%), Gaps = 23/514 (4%)
Query: 656 ITHLCFADDLLVFMQGDSESATALQVVLVRLKQATGLGVNCDKSTMFWAGLGAEEKECCQ 715
ITHLCFADDLLVF G S + + + +GL ++ +KST++ AG+ +K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 716 SILGFQWGALPIRYLGLPLIASRLSYADCAPLIQKVQARIKSWKARYLSFAGRCLLVKAV 775
F GALP+RYLGLPL+ +++ +D PL++K++ RI W AR+LSFAGR L+ +V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 776 LSSMIIYWSSVFVLPQRVFKEIDSLFFRFLWAGVDLGLKRPAIRRQIACLPKEEGGLGIR 835
+ S+ +W S F LP KEIDS+ FLW+G +L K+ + C PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 836 SMQTLNDALNLRHVWDIVSGKDSLWARWVKRNLVKDKEFWVMKVPHDC-SWCWRKILGSR 894
S++ N L+ +W ++S SLW +W++ L++ FW + SW W+KIL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 895 EKAKFMICHQIGSGQSLKFWFDIWHPLGLLYEFLVENSRLASNFNTRALVSDFIRDGEWF 954
A + H I +G + FWFD W +G L + + A V++ + +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 955 IPPH--LLHILGDIVSSLHL-VTIGEVSVDRAIWLVGKYGD-----YTLKETYEHIRQRG 1006
H LL I I H +T GE D W GD + KET+ R+
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGE---DTVRW--KGNGDIFKPCFNTKETWAATREPK 361
Query: 1007 SKVPWKNLVWFSHSIPRHCFIGWVAMQRGLKTNLKLISWGMQVNSSCYLCSHEDESDFHL 1066
KV W VWFSH+ P++ + W+A++ L T +++SW +SSC LC H E+ HL
Sbjct: 362 LKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHL 421
Query: 1067 LFGCQFSISVWQELLKILDVYSPRFTD-WEHAVGWCIDQFSGS--TFSKRMGCLIFNGFI 1123
F C +S VW L + L S FT+ WE + ++ G F R F +
Sbjct: 422 FFTCPYSAEVWSTLTRKL--LSQHFTNRWEAILKLLTNKSLGHEVPFLTRY---TFQLTL 476
Query: 1124 YHVWRERNIRAFQKISRSPLSIVHEVLTELRIKV 1157
+ +W+ERN R ++ ++ +V + ++R ++
Sbjct: 477 HSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRI 510
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 274 bits (700), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 229/430 (53%), Gaps = 15/430 (3%)
Query: 656 ITHLCFADDLLVFMQGDSESATALQVVLVRLKQATGLGVNCDKSTMFWAGLGAEEKECCQ 715
ITHLCFADDLLVF G S + + + +GL ++ +KST++ AG+ +K
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 716 SILGFQWGALPIRYLGLPLIASRLSYADCAPLIQKVQARIKSWKARYLSFAGRCLLVKAV 775
F GALP+RYLGLPL+ +++ +D PL++K++ RI W AR+LSFAGR L+ +V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 776 LSSMIIYWSSVFVLPQRVFKEIDSLFFRFLWAGVDLGLKRPAIRRQIACLPKEEGGLGIR 835
+ S+ +W S F LP KEIDS+ FLW+G +L K+ + C PK+EGGLGIR
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 836 SMQTLNDALNLRHVWDIVSGKDSLWARWVKRNLVKDKEFWVMKVPHDC-SWCWRKILGSR 894
S++ N L+ +W ++S SLW +W++ L++ FW + SW W+KIL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 895 EKAKFMICHQIGSGQSLKFWFDIWHPLGLLYEFLVENSRLASNFNTRALVSDFIRDGEWF 954
A + H I +G + FWFD W +G L + + A V++ + +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 955 IPPH--LLHILGDIVSSLHL-VTIGEVSVDRAIWLVGKYGD-----YTLKETYEHIRQRG 1006
H LL I I H +T GE D W GD + KET+ R+
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSGE---DTVRW--KGNGDIFKPCFNTKETWAATREPK 361
Query: 1007 SKVPWKNLVWFSHSIPRHCFIGWVAMQRGLKTNLKLISWGMQVNSSCYLCSHEDESDFHL 1066
KV W VWFSH+ P++ + W+A++ L T +++SW +SSC LC H E+ HL
Sbjct: 362 LKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHL 421
Query: 1067 LFGCQFSISV 1076
F C +S V
Sbjct: 422 FFTCPYSAEV 431
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 241 bits (616), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/466 (33%), Positives = 238/466 (51%), Gaps = 23/466 (4%)
Query: 704 AGLGAEEKECCQSILGFQWGALPIRYLGLPLIASRLSYADCAPLIQKVQARIKSWKARYL 763
AG+ +K F GALP+RYLGLPL+ +++ +D PL++K++ RI W AR+L
Sbjct: 2 AGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHL 61
Query: 764 SFAGRCLLVKAVLSSMIIYWSSVFVLPQRVFKEIDSLFFRFLWAGVDLGLKRPAIRRQIA 823
SFAGR L+ +V+ S+ +W S F LP KEIDS+ FLW+G +L K+ +
Sbjct: 62 SFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDV 121
Query: 824 CLPKEEGGLGIRSMQTLNDALNLRHVWDIVSGKDSLWARWVKRNLVKDKEFWVMKVPHDC 883
C PK+EGGLGIRS++ N L+ +W ++S SLW +W++ L++ FW +
Sbjct: 122 CTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTL 180
Query: 884 -SWCWRKILGSREKAKFMICHQIGSGQSLKFWFDIWHPLGLLYEFLVENSRLASNFNTRA 942
SW W+KIL R A + H I +G + FWFD W +G L + + A
Sbjct: 181 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHA 240
Query: 943 LVSDFIRDGEWFIPPH--LLHILGDIVSSLHL-VTIGEVSVDRAIWLVGKYGD-----YT 994
V++ + + H LL I I H +T GE D W GD +
Sbjct: 241 SVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGE---DTVRW--KGNGDIFKPCFN 295
Query: 995 LKETYEHIRQRGSKVPWKNLVWFSHSIPRHCFIGWVAMQRGLKTNLKLISWGMQVNSSCY 1054
KET+ R+ KV W VWFSH+ P++ + W+A++ L T +++SW +SSC
Sbjct: 296 TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 355
Query: 1055 LCSHEDESDFHLLFGCQFSISVWQELLKILDVYSPRFTD-WEHAVGWCIDQFSGS--TFS 1111
LC H E+ HL F C +S VW L + L S FT+ WE + ++ G F
Sbjct: 356 LCHHLVETRDHLFFTCPYSAEVWSTLTRKL--LSQHFTNRWEAILKLLTNKSLGHEVPFL 413
Query: 1112 KRMGCLIFNGFIYHVWRERNIRAFQKISRSPLSIVHEVLTELRIKV 1157
R F ++ +W+ERN R ++ ++ +V + ++R ++
Sbjct: 414 TRY---TFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRI 456
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 212 bits (540), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 228/497 (45%), Gaps = 53/497 (10%)
Query: 10 EDNKLVIQRSISPFWSFLDNYEEDEGGRIWLAWDARELRVDLLFKSAQILAVHVEMQNGA 69
E N I S P W NY E GRIW+ WD + V + K+ Q++
Sbjct: 173 ESNAPAILDSTLPSWRLDTNYCCSELGRIWIVWDP-SVSVLVFKKTDQLM---------- 221
Query: 70 EFLLAVVYGSNSSSERKLLWQDIKGLTADFEVPWLFMGDFNSFMGWDEKRG--GREVKPS 127
+ +GDF+ + +
Sbjct: 222 ----------------------------------ILVGDFDQIAATSDHYSVLQTSIPMR 247
Query: 128 QYEDLLDCTQTSLLFDCPYTGCHFTWSNGQEGEAGIWTKIDRVLINIDWLEVFPGSKVNF 187
E+ +C + S L D P G H+TWSN Q+ + I K+DR + N DW FP + F
Sbjct: 248 GLEEFQNCLRDSDLVDIPSRGVHYTWSNHQD-DNPIIRKLDRAIANGDWFSSFPSAIAVF 306
Query: 188 GQPRSSDHSPAIVTLDEVVPRGRRPFKFFNCWVEETGFQELVEVVWHQKVE-GNPMFRFL 246
SDHSP I+ L+ + R ++ F++F+ F + V W +++ G+ MF
Sbjct: 307 ELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLG 366
Query: 247 SKLKAVKGSLIQWKNSVFKDFPSQVEKAKEEMILTQQGLQADPLNAELRRAERRAVEGYA 306
LKA K F + + ++A + + Q L +P ++ L R E A + +
Sbjct: 367 EHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDS-LFRVEHVARKKWN 425
Query: 307 AKAKAESSMLKQQARVRWLTLDDNNNKFFHSTIKERGSRNHIRRLVRSNGEVVDDLEGVI 366
A A S +Q++R++WL D N +FFH I ++N I+ L + V+++ V
Sbjct: 426 FFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVK 485
Query: 367 AECVSYYEEMLGTADEDAQEDEILESFQFQHPF--ASTNSEDLDKMVSRDEIVYALSSIG 424
V+YY +LG+ D D + ++ + HPF T + L + S EI A+ ++
Sbjct: 486 EMIVAYYTHLLGS-DSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMP 544
Query: 425 SDRAPGPDGFSSFFFKHCWKIVGDDFVLAVQNFFRSGKLLGEVNSTLVSLIPKVSNASCM 484
++APGPD F++ FF W +V D + AV+ FFR+G LL N+T ++LIPKV+ +
Sbjct: 545 RNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQL 604
Query: 485 KDFRPISCCNVIYKCIT 501
FRP+SCC V+YK IT
Sbjct: 605 SMFRPVSCCTVVYKIIT 621