BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0100.1
(479 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G07760.1 | Zinc knuckle (CCHC-type) family protein | Chr2:358... 90 5e-19
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 88 3e-18
AT3G57587.1 | Ta11-like non-LTR retrotransposon | Chr3:21328263-... 61 1e-09
AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVE... 56 4e-08
AT2G02103.1 | Ta11-like non-LTR retrotransposon | Chr2:530425-53... 53 4e-07
>AT2G07760.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:3584420-3586278 REVERSE LENGTH=530 | 201606
Length = 530
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 124 YIANRLFLVRPWKLFIEEDITMMDSVPIWVCLRNVPGFLWNSRGLAQIASHLGTPIMLDA 183
++ + L V PW D+ + ++P+WV L+N+P L++ G++ IAS LG P+
Sbjct: 214 HVDDCLMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPMATYK 273
Query: 184 PTENRSRMSFARVLVEVGKDCSMPATIPVLVDGERRIE-IRVEYAWKPIRCSGCSSFGHT 242
P + S MS A +LVEV + P I VD + I + VEYAW P +C C GH
Sbjct: 274 PRLDPSLMSEANILVEVELSKAFPPRI-AAVDKKGNISMVNVEYAWIPAKCGKCGQLGHK 332
Query: 243 SSRC 246
+SRC
Sbjct: 333 ASRC 336
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 8/187 (4%)
Query: 61 KCEEWLIGSFIGRRLDFGFVRATLIRLWKPRGEMKITVQGESAFIIQFDLDEDRQRVLEM 120
KC +I +G ++ + L LWKP G M + F+I+F+L+E+ L
Sbjct: 79 KC---MIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTG 135
Query: 121 EPLYIANRLFLVRPWKLFIEEDITMMDSVPIWVCLRNVPGFLWNSRGLAQIASHLGTPIM 180
P + LV+ W + + + P+WV L N+P ++ L +IA LG P+
Sbjct: 136 GPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLK 195
Query: 181 LDAPTENRSRMSFARVLVEVGKDCSMPATIPVLVDGERRIEIRVEYAWKPIRCSGCSSFG 240
+D T N + FARV +EV + + P VL++G+R V Y CS C +G
Sbjct: 196 VDMNTINFDKGRFARVCIEV--NLAKPLKGTVLINGDRYF---VAYEGLSKICSSCGIYG 250
Query: 241 HTSSRCP 247
H CP
Sbjct: 251 HLVHSCP 257
>AT3G57587.1 | Ta11-like non-LTR retrotransposon |
Chr3:21328263-21329357 FORWARD LENGTH=364 | 201606
Length = 364
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 90/225 (40%), Gaps = 16/225 (7%)
Query: 62 CEEWLIGSFIGRRLD-----FGFVRATLIRLWKPRGEMKITVQGE--SAFIIQFDLDE-- 112
EE+ S I R L+ V A L R W M + V G A +QF
Sbjct: 31 VEEFNRLSIIARPLNPRVQNLNAVIAALPRYWG----MTVHVHGRILDATYVQFLFQNEV 86
Query: 113 DRQRVLEMEPLYIANRLFLVRPWKLFIEEDITMMDSVPIWVCLRNVPGFLWNSRGLAQIA 172
D Q V EP N + W+ + + S+ +WV +R +P +IA
Sbjct: 87 DLQSVQRREPWIFNNWFVATQRWE--PAPALNFVTSIDLWVQIRGIPLPYVCEETALEIA 144
Query: 173 SHLGTPIMLDAPTENRSRMSFARVLVEVGKDCSMPATIPVLVDGERRIEIRVEYAWKPIR 232
LG IMLD +++++ RV V G + ++ D + IR +Y
Sbjct: 145 RDLGEVIMLDHHDATSTQITYIRVRVRFGITDRLRFFQRIIFDSGEVVTIRFQYERLRRI 204
Query: 233 CSGCSSFGHTSSRCPLGARPNASVNVQKSNVGNVAPDSSLNKGKQ 277
CS C F H + CP RP+ S+ +++ + SSLN Q
Sbjct: 205 CSSCFRFTHNRAYCPYRPRPH-SIARERAVFRDSVHRSSLNSQSQ 248
>AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVERSE
LENGTH=568 | 201606
Length = 568
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 74/157 (47%)
Query: 124 YIANRLFLVRPWKLFIEEDITMMDSVPIWVCLRNVPGFLWNSRGLAQIASHLGTPIMLDA 183
++ + L V W ++ + +P W+ L+N+P L++ +G+ IAS +G ++
Sbjct: 227 HVDDCLMFVSTWSPVANFEVPEITMIPAWLTLKNIPNQLYSFKGIKWIASGIGETMLTSR 286
Query: 184 PTENRSRMSFARVLVEVGKDCSMPATIPVLVDGERRIEIRVEYAWKPIRCSGCSSFGHTS 243
P + ++M A++LVEV D P + + + + V Y+W P +C + +
Sbjct: 287 PWLDPTQMGEAKILVEVKLDKPFPQRVALKEECGSITMVDVVYSWLPSKCLEKTVVSACN 346
Query: 244 SRCPLGARPNASVNVQKSNVGNVAPDSSLNKGKQEWV 280
+ PL + + + + V+ +++ KG + V
Sbjct: 347 NGTPLNENSIVNASTKALDTAIVSNGAAILKGFHKTV 383
>AT2G02103.1 | Ta11-like non-LTR retrotransposon |
Chr2:530425-531636 REVERSE LENGTH=403 | 201606
Length = 403
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 145 MMDSVPIWVCLRNVPGFLWNSRGLAQIASHLGTPIMLDAPTENRSRMSFARVLVEVGKDC 204
++ ++ +WV +R +P + + +IA LG I LD +++F RV V G
Sbjct: 117 LVTTIDLWVQIRGIPLPYVSEETVMEIAHDLGEIISLDFHEATSPQIAFIRVRVRFGITD 176
Query: 205 SMPATIPVLVDGERRIEIRVEYAWKPIRCSGCSSFGHTSSRCPLGARPNASVNVQKSNVG 264
+ V+ D IR +Y CS C F H + CP RP S+ +++
Sbjct: 177 RLRFFQRVIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQRP-LSIARERALFC 235
Query: 265 NVAPDSSLNKGKQ 277
+ SS+N Q
Sbjct: 236 DSVQRSSMNSQSQ 248