BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0130.1
(847 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 230 6e-66
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 230 6e-66
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 228 7e-63
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 187 3e-51
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 155 9e-39
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 230 bits (586), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 222/459 (48%), Gaps = 52/459 (11%)
Query: 412 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVRKSTIFFAGLSAQGQSDVT 471
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++D+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 472 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKRQIQSWNSRFLSFAGR------- 524
F +G+LP+RYLGLPL++ ++T S PL++KI+ +I W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 525 ---------------------------------ADLGCKRAPIGWENLCYPTDEGGLGFR 551
+L K+A + W ++C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 552 NIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 610
+++ + S L+ IW ++S T+LW +W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 611 PTTQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHKYDSHLNLDARVSQFIGQSGWV 670
+ + +G NT FW D W G L+D D + L A V++ +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 671 FPTHVAAM-LGTIAVEAREVVVDSTLRDEVIWMPSQNGE-----FTLKETYEAIRPRGTR 724
H + + + E R + S D V W NG+ F KET+ A R +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 725 LSWTSLVWSPSGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFHLFF 784
++W VW PK+ + W+A + RL T + SW D++CV C ET HLFF
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 785 GCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINQFGG 823
C + +W +L K+ Q WE L+ N+ G
Sbjct: 424 TCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLG 461
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 230 bits (586), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 144/459 (31%), Positives = 222/459 (48%), Gaps = 52/459 (11%)
Query: 412 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVRKSTIFFAGLSAQGQSDVT 471
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++D+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 472 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKRQIQSWNSRFLSFAGR------- 524
F +G+LP+RYLGLPL++ ++T S PL++KI+ +I W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 525 ---------------------------------ADLGCKRAPIGWENLCYPTDEGGLGFR 551
+L K+A + W ++C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 552 NIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 610
+++ + S L+ IW ++S T+LW +W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 611 PTTQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHKYDSHLNLDARVSQFIGQSGWV 670
+ + +G NT FW D W G L+D D + L A V++ +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 671 FPTHVAAM-LGTIAVEAREVVVDSTLRDEVIWMPSQNGE-----FTLKETYEAIRPRGTR 724
H + + + E R + S D V W NG+ F KET+ A R +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 725 LSWTSLVWSPSGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFHLFF 784
++W VW PK+ + W+A + RL T + SW D++CV C ET HLFF
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 785 GCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINQFGG 823
C + +W +L K+ Q WE L+ N+ G
Sbjct: 424 TCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLG 461
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 228 bits (580), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 216/447 (48%), Gaps = 53/447 (11%)
Query: 412 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVRKSTIFFAGLSAQGQSDVT 471
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++D+
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 472 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKRQIQSWNSRFLSFAGR------- 524
F +G+LP+RYLGLPL++ ++T S PL++KI+ +I W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 525 ---------------------------------ADLGCKRAPIGWENLCYPTDEGGLGFR 551
+L K+A + W ++C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 552 NIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 610
+++ + S L+ IW ++S T+LW +W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 611 PTTQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHKYDSHLNLDARVSQFIGQSGWV 670
+ + +G NT FW D W G L+D D + L A V++ +
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPR 306
Query: 671 FPTHVAAM-LGTIAVEAREVVVDSTLRDEVIWMPSQNGE-----FTLKETYEAIRPRGTR 724
H + + + E R + S D V W NG+ F KET+ A R +
Sbjct: 307 RHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLK 363
Query: 725 LSWTSLVWSPSGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFHLFF 784
++W VW PK+ + W+A + RL T + SW D++CV C ET HLFF
Sbjct: 364 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 423
Query: 785 GCSVTKIIWESLLLKMGFQRVCAADWE 811
C + + L + FQ + W+
Sbjct: 424 TCPYSAEV--PFLTRYTFQLTLHSLWK 448
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 187 bits (475), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 193/415 (46%), Gaps = 52/415 (12%)
Query: 459 FAGLSAQGQSDVTTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKRQIQSWNSRF 518
AG+ ++D+ F +G+LP+RYLGLPL++ ++T S PL++KI+ +I W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 519 LSFAGR----------------------------------------ADLGCKRAPIGWEN 538
LSFAGR +L K+A + W +
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 539 LCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASSR 598
+C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++ FW++S ++
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 599 -SSWCWRRILASRPTTQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHKYDSHLNLD 657
SW W++IL R + + +G NT FW D W G L+D D + L
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH 239
Query: 658 ARVSQFIGQSGWVFPTHVAAM-LGTIAVEAREVVVDSTLRDEVIWMPSQNGE-----FTL 711
A V++ + H + + + E R + S D V W NG+ F
Sbjct: 240 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNT 296
Query: 712 KETYEAIRPRGTRLSWTSLVWSPSGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVF 771
KET+ A R +++W VW PK+ + W+A + RL T + SW D++CV
Sbjct: 297 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 356
Query: 772 CGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINQFGGLSI 826
C ET HLFF C + +W +L K+ Q WE L+ N+ G +
Sbjct: 357 CHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEV 410
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 155 bits (391), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 168/399 (42%), Gaps = 79/399 (19%)
Query: 459 FAGLSAQGQSDVTTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKRQIQSWNSRF 518
AG+ ++D+ F +G+LP+RYLGLPL++ ++T S PL++KI+ +I W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 519 LSFAGR----------------------------------------ADLGCKRAPIGWEN 538
LSFAGR +L K+A + W +
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 539 LCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASSR 598
+C P DEGGLG R++ + +N W +SG TTL
Sbjct: 121 VCTPKDEGGLGIRSL----KEANKGSFWS-ISGNTTL----------------------- 152
Query: 599 SSWCWRRILASRPTTQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHKYDSHLNLDA 658
SW W++IL R + + +G NT FW D W G L+D D + L A
Sbjct: 153 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHA 212
Query: 659 RVSQFIGQSGWVFPTHVAAM-LGTIAVEAREVVVDSTLRDEVIWMPSQNGE-----FTLK 712
V++ + H + + + E R + S D V W NG+ F K
Sbjct: 213 SVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTK 269
Query: 713 ETYEAIRPRGTRLSWTSLVWSPSGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVFC 772
ET+ A R +++W VW PK+ + W+A + RL T + SW D++CV C
Sbjct: 270 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 329
Query: 773 GGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWE 811
ET HLFF C + + L + FQ + W+
Sbjct: 330 HHLVETRDHLFFTCPYSAEV--PFLTRYTFQLTLHSLWK 366