BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0190.1
(463 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 101 1e-22
AT2G07760.1 | Zinc knuckle (CCHC-type) family protein | Chr2:358... 77 6e-15
AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVE... 58 9e-09
AT4G02000.1 | Ta11-like non-LTR retrotransposon | Chr4:874959-87... 57 1e-08
AT2G13450.1 | Ta11-like non-LTR retrotransposon | Chr2:5598739-5... 54 2e-07
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 5/189 (2%)
Query: 132 ERWIVGNFIGGRLSFEVVRRNLMKVWRPKGTVSITIHGDSVFIIKPYLEEDRIHILEHEP 191
++ ++ +G ++ V+ R L ++W+P G +++ F+I+ LEE+ + L P
Sbjct: 78 KKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGP 137
Query: 192 ITIANRIFIVRPWSLNIERKMTSFTTIPIWVNLKNVPIVLWDEEGLQSLASWIGKPLFLD 251
+ +V+ WS + T P+WV L N+P + L +A +G+PL +D
Sbjct: 138 WRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVD 197
Query: 252 GPTATQARMAYARVCVEVSLDKELPRTILVFLNGVRDVDVVVDYSWKPLFCSKCAVLGHS 311
T + +ARVC+EV+L K L T+L+ NG R V Y CS C + GH
Sbjct: 198 MNTINFDKGRFARVCIEVNLAKPLKGTVLI--NGDR---YFVAYEGLSKICSSCGIYGHL 252
Query: 312 TAKCPKAVI 320
CP+ V+
Sbjct: 253 VHSCPRNVV 261
>AT2G07760.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:3584420-3586278 REVERSE LENGTH=530 | 201606
Length = 530
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 59/120 (49%)
Query: 198 IFIVRPWSLNIERKMTSFTTIPIWVNLKNVPIVLWDEEGLQSLASWIGKPLFLDGPTATQ 257
+ V PWS + +TIP+WV LKN+P L+ G+ +AS +G P+ P
Sbjct: 219 LMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPMATYKPRLDP 278
Query: 258 ARMAYARVCVEVSLDKELPRTILVFLNGVRDVDVVVDYSWKPLFCSKCAVLGHSTAKCPK 317
+ M+ A + VEV L K P I V V+Y+W P C KC LGH ++C K
Sbjct: 279 SLMSEANILVEVELSKAFPPRIAAVDKKGNISMVNVEYAWIPAKCGKCGQLGHKASRCMK 338
>AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVERSE
LENGTH=568 | 201606
Length = 568
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 198 IFIVRPWSLNIERKMTSFTTIPIWVNLKNVPIVLWDEEGLQSLASWIGKPLFLDGPTATQ 257
+ V WS ++ T IP W+ LKN+P L+ +G++ +AS IG+ + P
Sbjct: 232 LMFVSTWSPVANFEVPEITMIPAWLTLKNIPNQLYSFKGIKWIASGIGETMLTSRPWLDP 291
Query: 258 ARMAYARVCVEVSLDKELPRTILVF--LNGVRDVDVVVDYSWKPLFCSKCAVLG 309
+M A++ VEV LDK P+ + + + VDVV YSW P C + V+
Sbjct: 292 TQMGEAKILVEVKLDKPFPQRVALKEECGSITMVDVV--YSWLPSKCLEKTVVS 343
>AT4G02000.1 | Ta11-like non-LTR retrotransposon |
Chr4:874959-875903 FORWARD LENGTH=314 | 201606
Length = 314
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 3/145 (2%)
Query: 182 DRIHILEHEPITIANRIFIVRPWSLNIERKMTSFTTIPIWVNLKNVPIVLWDEEGLQSLA 241
D + +L EP N W +N+ + T+I +WV ++ +P++ EE +A
Sbjct: 7 DLLSVLRREPWLYNNWFVTTHRWEVNLTFHL--LTSIELWVQMRGIPLLYVCEETALEIA 64
Query: 242 SWIGKPLFLDGPTATQARMAYARVCVEVSLDKELPRTILVFLNGVRDVDVVVDYSWKPLF 301
+GK L LD +T ++AY RV + + L + + + Y
Sbjct: 65 HELGKILTLDFHDSTTTQIAYIRVRIRFGITDRLRFFQRIIFDFGEAALISFQYERLRRI 124
Query: 302 CSKCAVLGHSTAKCP-KAVIPVQQV 325
CS C + H CP + + P+ +V
Sbjct: 125 CSSCFRMTHHRNSCPYRQIEPLHRV 149
>AT2G13450.1 | Ta11-like non-LTR retrotransposon |
Chr2:5598739-5599923 REVERSE LENGTH=394 | 201606
Length = 394
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 180 EEDRIHILEHEPITIANRIFIVRPWSLNIERKMTSFTTIPIWVNLKNVPIVLWDEEGLQS 239
E D + +L EP N + W +N+ + T+I +WV ++ +P++ EE
Sbjct: 85 EIDLLSVLRREPWLYNNWFVTAQRWEVNLTFHL--LTSIELWVQMRGIPLLYVCEETALE 142
Query: 240 LASWIGKPLFLDGPTATQARMAYARVCVEVSLDKELPRTILVFLNGVRDVDVVVDYSWKP 299
+A +G+ + LD +T ++AY RV + + L + + + + Y
Sbjct: 143 IAHELGEIITLDFHDSTTTQIAYIRVRIRFGITDRLRFFLRIIFDSGETALISFQYERLR 202
Query: 300 LFCSKCAVLGHSTAKC 315
CS C + H C
Sbjct: 203 RICSSCFRMTHHRNSC 218