BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0240.1
(646 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G07760.1 | Zinc knuckle (CCHC-type) family protein | Chr2:358... 77 1e-14
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 65 1e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 60 4e-09
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 60 4e-09
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 60 6e-09
>AT2G07760.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:3584420-3586278 REVERSE LENGTH=530 | 201606
Length = 530
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Query: 199 LFFVRPWRLFIEEDIASMETLPVWVCFRNVPMFLWNSKGLAMIASHLGKPIMLDEPTARR 258
L FV PW D+ + T+PVWV +N+P L++ G++ IAS LG P+ +P
Sbjct: 219 LMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPMATYKPRLDP 278
Query: 259 SRLAYARVCVEIPKECTMPEVISFAIKDSRVINIHVEYAWKSLKCSGCGVSNYQRRSRNN 318
S ++ A + VE+ P I+ K + ++VEYAW KC CG + + SR
Sbjct: 279 SLMSEANILVEVELSKAFPPRIAAVDKKGNISMVNVEYAWIPAKCGKCGQLGH-KASRCM 337
Query: 319 IPFIYNGRNEKVLKADLVAQECVDF 343
P + + + +++ +++ V
Sbjct: 338 KPHLAHEKVTEIVSEEIITPAIVSL 362
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 11/171 (6%)
Query: 144 RLPFPLVRRVLIARWRPKGEMFLTAHGDVSYIIRFALEEHRQRVLEMEALYIVNRLFFVR 203
++P ++ R L W+P G M + ++IRF LEE L ++ V+
Sbjct: 89 QIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELEEEYMAALTGGPWRVLGNYLLVQ 148
Query: 204 PWRLFIEEDIASMETLPVWVCFRNVPMFLWNSKGLAMIASHLGKPIMLDEPTARRSRLAY 263
W + + T PVWV N+P ++ L IA LG+P+ +D T + +
Sbjct: 149 DWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEIARGLGRPLKVDMNTINFDKGRF 208
Query: 264 ARVCVEIPKECTMPEVISFAIKDSRVIN---IHVEYAWKSLKCSGCGVSNY 311
ARVC+E+ ++ +K + +IN V Y S CS CG+ +
Sbjct: 209 ARVCIEVN--------LAKPLKGTVLINGDRYFVAYEGLSKICSSCGIYGH 251
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 572 LVTHLAFVDDLLVFSRGDFGSAMALAEVLTSFYECTGLRVNQRKSSLFSAGLPDNEVQLF 631
L+THL F DDLLVF+ G S + ++ F + +GL+++ KS+++ AG+ DN+
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 632 PDVLGFECASLPVRY 646
F +LPVRY
Sbjct: 67 LHSFPFASGALPVRY 81
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 572 LVTHLAFVDDLLVFSRGDFGSAMALAEVLTSFYECTGLRVNQRKSSLFSAGLPDNEVQLF 631
L+THL F DDLLVF+ G S + ++ F + +GL+++ KS+++ AG+ DN+
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 632 PDVLGFECASLPVRY 646
F +LPVRY
Sbjct: 67 LHSFPFASGALPVRY 81
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 572 LVTHLAFVDDLLVFSRGDFGSAMALAEVLTSFYECTGLRVNQRKSSLFSAGLPDNEVQLF 631
L+THL F DDLLVF+ G S + ++ F + +GL+++ KS+++ AG+ DN+
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 632 PDVLGFECASLPVRY 646
F +LPVRY
Sbjct: 67 LHSFPFASGALPVRY 81