BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0290.1
(442 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01050.1 | zinc ion binding / nucleic acid binding protein | ... 87 5e-18
AT2G07760.1 | Zinc knuckle (CCHC-type) family protein | Chr2:358... 84 3e-17
AT3G57587.1 | Ta11-like non-LTR retrotransposon | Chr3:21328263-... 62 3e-10
AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVE... 55 8e-08
AT2G41590.1 | Ta11-like non-LTR retrotransposon | Chr2:17343600-... 51 1e-06
>AT2G01050.1 | zinc ion binding / nucleic acid binding protein |
Chr2:68337-69884 REVERSE LENGTH=515 | 201606
Length = 515
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 10/209 (4%)
Query: 69 EEIRECEN-----LLIGSFVGQRLPFSLVRRVLNARWKPKGEMFLTVHGDTSYVIRFALE 123
EE+ E N +I +G ++P S++ R L WKP G M + ++IRF LE
Sbjct: 67 EEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELE 126
Query: 124 EDRQRVLEMEPLYIVNRLFFVRPWRLFIEDDINAMDSLPIWVCFRNVPMFLCNPKGLAMI 183
E+ L P ++ V+ W + + + + P+WV N+P + L I
Sbjct: 127 EEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEI 186
Query: 184 ASHLGKPIMLDEPTARRSRLAYARVCVEIPKECSMPEVISFAIKDSRVITIPVEYAWKPL 243
A LG+P+ +D T + +ARVC+E+ + P + I R V Y
Sbjct: 187 ARGLGRPLKVDMNTINFDKGRFARVCIEV--NLAKPLKGTVLINGDRYF---VAYEGLSK 241
Query: 244 KCSGCGGFGHSLGKCKSSVRPNASEKAET 272
CS CG +GH + C +V S AET
Sbjct: 242 ICSSCGIYGHLVHSCPRNVVVKVSAGAET 270
>AT2G07760.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:3584420-3586278 REVERSE LENGTH=530 | 201606
Length = 530
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 136 YIVNRLFFVRPWRLFIEDDINAMDSLPIWVCFRNVPMFLCNPKGLAMIASHLGKPIMLDE 195
++ + L FV PW D+ + ++P+WV +N+P L + G++ IAS LG P+ +
Sbjct: 214 HVDDCLMFVAPWSTVNTFDLPEISTIPVWVTLKNIPNRLYSILGISHIASGLGAPMATYK 273
Query: 196 PTARRSRLAYARVCVEIPKECSMPEVISFAIKDSRVITIPVEYAWKPLKCSGCGGFGHSL 255
P S ++ A + VE+ + P I+ K + + VEYAW P KC CG GH
Sbjct: 274 PRLDPSLMSEANILVEVELSKAFPPRIAAVDKKGNISMVNVEYAWIPAKCGKCGQLGHKA 333
Query: 256 GKCKSSVRPNASEKAETSAPGD----PGVVAQTGPSILARAQDLIS 297
+C ++P+ + + T + P +V+ LA A +L+S
Sbjct: 334 SRC---MKPHLAHEKVTEIVSEEIITPAIVS------LASATNLVS 370
>AT3G57587.1 | Ta11-like non-LTR retrotransposon |
Chr3:21328263-21329357 FORWARD LENGTH=364 | 201606
Length = 364
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 106 MFLTVHG---DTSYV-IRFALEEDRQRVLEMEPLYIVNRLFFVRPWRLFIEDDINAMDSL 161
M + VHG D +YV F E D Q V EP N +FV R +N + S+
Sbjct: 64 MTVHVHGRILDATYVQFLFQNEVDLQSVQRREPWIFNN--WFVATQRWEPAPALNFVTSI 121
Query: 162 PIWVCFRNVPM-FLCNPKGLAMIASHLGKPIMLDEPTARRSRLAYARVCVEIPKECSMPE 220
+WV R +P+ ++C L IA LG+ IMLD A +++ Y RV V +
Sbjct: 122 DLWVQIRGIPLPYVCEETALE-IARDLGEVIMLDHHDATSTQITYIRVRVRFGITDRLRF 180
Query: 221 VISFAIKDSRVITIPVEYAWKPLKCSGCGGFGHSLGKCKSSVRPN--ASEKA 270
V+TI +Y CS C F H+ C RP+ A E+A
Sbjct: 181 FQRIIFDSGEVVTIRFQYERLRRICSSCFRFTHNRAYCPYRPRPHSIARERA 232
>AT5G28823.1 | hypothetical protein | Chr5:10837849-10839826 REVERSE
LENGTH=568 | 201606
Length = 568
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%)
Query: 141 LFFVRPWRLFIEDDINAMDSLPIWVCFRNVPMFLCNPKGLAMIASHLGKPIMLDEPTARR 200
L FV W ++ + +P W+ +N+P L + KG+ IAS +G+ ++ P
Sbjct: 232 LMFVSTWSPVANFEVPEITMIPAWLTLKNIPNQLYSFKGIKWIASGIGETMLTSRPWLDP 291
Query: 201 SRLAYARVCVEIPKECSMPEVISFAIKDSRVITIPVEYAWKPLKC 245
+++ A++ VE+ + P+ ++ + + + V Y+W P KC
Sbjct: 292 TQMGEAKILVEVKLDKPFPQRVALKEECGSITMVDVVYSWLPSKC 336
>AT2G41590.1 | Ta11-like non-LTR retrotransposon |
Chr2:17343600-17344703 FORWARD LENGTH=367 | 201606
Length = 367
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 6/159 (3%)
Query: 110 VHG---DTSYV-IRFALEEDRQRVLEMEPLYIVNRLFFVRPWRLFIEDDINAMDSLPIWV 165
VHG D +YV F E D V EP N +FV R + N + ++ +WV
Sbjct: 68 VHGRILDATYVQFLFQNEIDLMMVQRKEPWLFNN--WFVAATRWEVAPAHNFVTTIDLWV 125
Query: 166 CFRNVPMFLCNPKGLAMIASHLGKPIMLDEPTARRSRLAYARVCVEIPKECSMPEVISFA 225
R +P+ + + + IA LG+ +MLD ++AY RV V +
Sbjct: 126 QIRGIPLPYVSEETVMEIAQDLGEVLMLDYHDTTSIQIAYIRVRVRFGITDRLRFFQRIV 185
Query: 226 IKDSRVITIPVEYAWKPLKCSGCGGFGHSLGKCKSSVRP 264
TI +Y CS C F H+ C RP
Sbjct: 186 FDSGETATIRFQYERLRRICSSCFRFTHNRAYCPYRPRP 224