BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0330.1
(508 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 231 2e-69
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 231 2e-69
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 224 2e-64
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 195 3e-56
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 189 3e-52
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 231 bits (590), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 233/484 (48%), Gaps = 48/484 (9%)
Query: 58 VTHLCFAVDLMVFFRGDTGSAQSLKGVLTGFHRATGLQANVLKSTVFFAGLSAQGQSDIT 117
+THLCFA DL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGIGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGQVLLVKVV 177
F G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAG++ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAVFVIPKRVINDINSIFSKFLWSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSA-------------------------------------NRP 260
+++ + S L+ IW ++S+ +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRA 247
Query: 261 TAQRLICTSLGDGHDTNFWTDVWRPRGLLYDTFAEGYRYDSHLHLDARVSQFIGQLGWVF 320
A + + +G +T+FW D W G L D D + L A V++ +
Sbjct: 248 LASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRR 307
Query: 321 PTHITAL-LGTIAVEAREVVVDSTLRDEVIWMRSQNGE-----FSLKETYEAIRPRGTRL 374
H T L + + E R + S D V W NG+ F+ KET+ A R ++
Sbjct: 308 HRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKV 364
Query: 375 SWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMIIDTTCVFCGGDEETDFHLVFG 434
+W VW PK+ + W+A + RL T + SW D++CV C ET HL F
Sbjct: 365 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFT 424
Query: 435 CSVTKIIWESLLLKMGFQRVCAADWEGEQQWCINHFGGLSIAARVGRMLLNAYVYHIRKE 494
C + +W +L K+ Q WE + N G + + R ++ + KE
Sbjct: 425 CPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEVPF-LTRYTFQLTLHSLWKE 482
Query: 495 RNNR 498
RN R
Sbjct: 483 RNGR 486
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 231 bits (590), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 233/484 (48%), Gaps = 48/484 (9%)
Query: 58 VTHLCFAVDLMVFFRGDTGSAQSLKGVLTGFHRATGLQANVLKSTVFFAGLSAQGQSDIT 117
+THLCFA DL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGIGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGQVLLVKVV 177
F G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAG++ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAVFVIPKRVINDINSIFSKFLWSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSA-------------------------------------NRP 260
+++ + S L+ IW ++S+ +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRA 247
Query: 261 TAQRLICTSLGDGHDTNFWTDVWRPRGLLYDTFAEGYRYDSHLHLDARVSQFIGQLGWVF 320
A + + +G +T+FW D W G L D D + L A V++ +
Sbjct: 248 LASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRR 307
Query: 321 PTHITAL-LGTIAVEAREVVVDSTLRDEVIWMRSQNGE-----FSLKETYEAIRPRGTRL 374
H T L + + E R + S D V W NG+ F+ KET+ A R ++
Sbjct: 308 HRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKV 364
Query: 375 SWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMIIDTTCVFCGGDEETDFHLVFG 434
+W VW PK+ + W+A + RL T + SW D++CV C ET HL F
Sbjct: 365 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFT 424
Query: 435 CSVTKIIWESLLLKMGFQRVCAADWEGEQQWCINHFGGLSIAARVGRMLLNAYVYHIRKE 494
C + +W +L K+ Q WE + N G + + R ++ + KE
Sbjct: 425 CPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEVPF-LTRYTFQLTLHSLWKE 482
Query: 495 RNNR 498
RN R
Sbjct: 483 RNGR 486
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 224 bits (571), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 218/446 (48%), Gaps = 48/446 (10%)
Query: 58 VTHLCFAVDLMVFFRGDTGSAQSLKGVLTGFHRATGLQANVLKSTVFFAGLSAQGQSDIT 117
+THLCFA DL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGIGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGQVLLVKVV 177
F G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAG++ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAVFVIPKRVINDINSIFSKFLWSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSA-------------------------------------NRP 260
+++ + S L+ IW ++S+ +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRA 247
Query: 261 TAQRLICTSLGDGHDTNFWTDVWRPRGLLYDTFAEGYRYDSHLHLDARVSQFIGQLGWVF 320
A + + +G +T+FW D W G L D D + L A V++ +
Sbjct: 248 LASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRR 307
Query: 321 PTHITAL-LGTIAVEAREVVVDSTLRDEVIWMRSQNGE-----FSLKETYEAIRPRGTRL 374
H T L + + E R + S D V W NG+ F+ KET+ A R ++
Sbjct: 308 HRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKV 364
Query: 375 SWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMIIDTTCVFCGGDEETDFHLVFG 434
+W VW PK+ + W+A + RL T + SW D++CV C ET HL F
Sbjct: 365 NWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFT 424
Query: 435 CSVTKIIWESLLLKMGFQRVCAADWE 460
C + + L + FQ + W+
Sbjct: 425 CPYSAEV--PFLTRYTFQLTLHSLWK 448
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 195 bits (495), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/437 (29%), Positives = 204/437 (46%), Gaps = 48/437 (10%)
Query: 105 FAGLSAQGQSDITSILEFGIGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 164
AG+ ++DI F G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 165 LSFAGQVLLVKVVLNSMLLYWAAVFVIPKRVINDINSIFSKFLWSGVDMGCKRAPIGWES 224
LSFAG++ L+ V++S+ +W + F +P I +I+SI S FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 225 LCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSA--------------------------- 257
+C P DEGGLG R+++ + S L+ IW ++S+
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTL 180
Query: 258 ----------NRPTAQRLICTSLGDGHDTNFWTDVWRPRGLLYDTFAEGYRYDSHLHLDA 307
+R A + + +G +T+FW D W G L D D + L A
Sbjct: 181 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHA 240
Query: 308 RVSQFIGQLGWVFPTHITAL-LGTIAVEAREVVVDSTLRDEVIWMRSQNGE-----FSLK 361
V++ + H T L + + E R + S D V W NG+ F+ K
Sbjct: 241 SVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTK 297
Query: 362 ETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMIIDTTCVFC 421
ET+ A R +++W VW PK+ + W+A + RL T + SW D++CV C
Sbjct: 298 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLC 357
Query: 422 GGDEETDFHLVFGCSVTKIIWESLLLKMGFQRVCAADWEGEQQWCINHFGGLSIAARVGR 481
ET HL F C + +W +L K+ Q WE + N G + + R
Sbjct: 358 HHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEVPF-LTR 415
Query: 482 MLLNAYVYHIRKERNNR 498
++ + KERN R
Sbjct: 416 YTFQLTLHSLWKERNGR 432
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 189 bits (480), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/371 (32%), Positives = 185/371 (49%), Gaps = 20/371 (5%)
Query: 105 FAGLSAQGQSDITSILEFGIGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 164
AG+ ++DI F G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 165 LSFAGQVLLVKVVLNSMLLYWAAVFVIPKRVINDINSIFSKFLWSGVDMGCKRAPIGWES 224
LSFAG++ L+ V++S+ +W + F +P I +I+SI S FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 225 LCYPTDEGGLGFRNIEVLFEAS------NLRH---IWDLVSANRPTAQRLICTSLGDGHD 275
+C P DEGGLG R+++ + S N +W + +R A + + +G +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSN 180
Query: 276 TNFWTDVWRPRGLLYDTFAEGYRYDSHLHLDARVSQFIGQLGWVFPTHITAL-LGTIAVE 334
T+FW D W G L D D + L A V++ + H T L + + E
Sbjct: 181 TSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAE 240
Query: 335 AREVVVDSTLRDEVIWMRSQNGE-----FSLKETYEAIRPRGTRLSWTSLVWSPGGIPKH 389
R + S D V W NG+ F+ KET+ A R +++W VW PK+
Sbjct: 241 VRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKY 297
Query: 390 CFITWLAFRRRLKTRSLLASWGMIIDTTCVFCGGDEETDFHLVFGCSVTKIIWESLLLKM 449
+ W+A + RL T + SW D++CV C ET HL F C + + L +
Sbjct: 298 SVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV--PFLTRY 355
Query: 450 GFQRVCAADWE 460
FQ + W+
Sbjct: 356 TFQLTLHSLWK 366