BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0370.1
(288 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 70 4e-13
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 70 4e-13
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 70 4e-13
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 54 6e-09
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 54 5e-08
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 201 LVTHLAFADDLLVFSKGDSASAKALLHVLEVFHLCTGLRVNHGKSSMFAAGVSNSILAQI 260
L+THL FADDLLVF+ G +S + +L + F +GL+++ KS+++ AGV ++ A I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 261 GDILGFNCCSLPVRYLGVPLIV 282
F +LPVRYLG+PL+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLT 88
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 201 LVTHLAFADDLLVFSKGDSASAKALLHVLEVFHLCTGLRVNHGKSSMFAAGVSNSILAQI 260
L+THL FADDLLVF+ G +S + +L + F +GL+++ KS+++ AGV ++ A I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 261 GDILGFNCCSLPVRYLGVPLIV 282
F +LPVRYLG+PL+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLT 88
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 201 LVTHLAFADDLLVFSKGDSASAKALLHVLEVFHLCTGLRVNHGKSSMFAAGVSNSILAQI 260
L+THL FADDLLVF+ G +S + +L + F +GL+++ KS+++ AGV ++ A I
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 261 GDILGFNCCSLPVRYLGVPLIV 282
F +LPVRYLG+PL+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLT 88
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 145 MVNGGSYGYFKGKRGLRQGCPMPPYLFVLVMEVFNVLIMRKVAEGSF-SLHPRCTKPLVT 203
++NG G RGLRQG P+ PYLF+L EV + L R +G + P +
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72
Query: 204 HLAFADDLLVFSKGDSASAKALLHVLEVF-------HLCTGLRVNHGKSSMFAAG 251
HL FAD D++SA+ + +++ L G VNH S+++ G
Sbjct: 73 HLLFAD--------DTSSARWIPLAAQIWPIFFLSMRLFQGNPVNHPMSNLYFLG 119
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 50 LTVRMKECISKLISPCQSAFISGRCIQDNILLAHELTRDYHKSVG-PARCAYKIDLQKAY 108
+ R+K ++ LI P Q++FI GR DNI+ E + G K+DL+KAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 109 DTIEWPALMKVMELMGFPS 127
D I W L + GFP
Sbjct: 61 DRIRWDYLEDTLISAGFPE 79