BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0380.1
(505 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 114 2e-26
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 111 6e-26
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 111 7e-26
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 111 7e-26
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 84 7e-17
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 4 FWLSVF-APMRVLREIDHMLSRFLWSGAGDEVRRAALGWTKVCFPMSEGGLGIRNVDILN 62
FW+S F P ++EID + S FLWSG ++A + W+ VC P EGGLGIR++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 63 IACCLRHIWDLFSNKDTLWVNWVQTNLIKKRDFW-LMDVPNMASWVWRRLLQFRKYGLLF 121
L+ IW + S+ +LWV W++ L++K FW + + SW+W+++L+ R F
Sbjct: 194 KVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGF 252
Query: 122 ACHVIGNGQSTRFWKDNWHPMGLL 145
H I NG +T FW DNW +G L
Sbjct: 253 VKHDIHNGSNTSFWFDNWSKIGRL 276
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 111 bits (277), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 4 FWLSVF-APMRVLREIDHMLSRFLWSGAGDEVRRAALGWTKVCFPMSEGGLGIRNVDILN 62
FW+S F P ++EID + S FLWSG ++A + W+ VC P EGGLGIR++ N
Sbjct: 80 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139
Query: 63 IACCLRHIWDLFSNKDTLWVNWVQTNLIKKRDFW-LMDVPNMASWVWRRLLQFRKYGLLF 121
L+ IW + S+ +LWV W++ L++K FW + + SW+W+++L+ R F
Sbjct: 140 KVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGF 198
Query: 122 ACHVIGNGQSTRFWKDNWHPMGLL 145
H I NG +T FW DNW +G L
Sbjct: 199 VKHDIHNGSNTSFWFDNWSKIGRL 222
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 111 bits (277), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 4 FWLSVF-APMRVLREIDHMLSRFLWSGAGDEVRRAALGWTKVCFPMSEGGLGIRNVDILN 62
FW+S F P ++EID + S FLWSG ++A + W+ VC P EGGLGIR++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 63 IACCLRHIWDLFSNKDTLWVNWVQTNLIKKRDFW-LMDVPNMASWVWRRLLQFRKYGLLF 121
L+ IW + S+ +LWV W++ L++K FW + + SW+W+++L+ R F
Sbjct: 194 KVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGF 252
Query: 122 ACHVIGNGQSTRFWKDNWHPMGLL 145
H I NG +T FW DNW +G L
Sbjct: 253 VKHDIHNGSNTSFWFDNWSKIGRL 276
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 111 bits (277), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 4 FWLSVF-APMRVLREIDHMLSRFLWSGAGDEVRRAALGWTKVCFPMSEGGLGIRNVDILN 62
FW+S F P ++EID + S FLWSG ++A + W+ VC P EGGLGIR++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 63 IACCLRHIWDLFSNKDTLWVNWVQTNLIKKRDFW-LMDVPNMASWVWRRLLQFRKYGLLF 121
L+ IW + S+ +LWV W++ L++K FW + + SW+W+++L+ R F
Sbjct: 194 KVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGF 252
Query: 122 ACHVIGNGQSTRFWKDNWHPMGLL 145
H I NG +T FW DNW +G L
Sbjct: 253 VKHDIHNGSNTSFWFDNWSKIGRL 276
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 68/143 (47%), Gaps = 29/143 (20%)
Query: 4 FWLSVFA-PMRVLREIDHMLSRFLWSGAGDEVRRAALGWTKVCFPMSEGGLGIRNVDILN 62
FW+S F P ++EID + S FLWSG ++A + W+ VC P EGGLGIR++
Sbjct: 80 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLK--- 136
Query: 63 IACCLRHIWDLFSNKDTLWVNWVQTNLIKKRDFWLMDVPNMASWVWRRLLQFRKYGLLFA 122
+NK + W T L SW+W+++L+ R F
Sbjct: 137 -----------EANKGSFWSISGNTTL--------------GSWMWKKILKHRALASGFV 171
Query: 123 CHVIGNGQSTRFWKDNWHPMGLL 145
H I NG +T FW DNW +G L
Sbjct: 172 KHDIHNGSNTSFWFDNWSKIGRL 194