BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0400.1
(546 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 149 5e-39
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 148 2e-38
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 148 2e-38
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 133 2e-32
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 122 8e-31
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 149 bits (376), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 173/369 (46%), Gaps = 18/369 (4%)
Query: 1 MGCKRDPIGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQ 60
+ K+ + W ++C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++
Sbjct: 109 LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLR 167
Query: 61 DQHFWILSASRR-SSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFE 119
FW +S + SW W++IL R+ A + + +G NT FW D W G L+D
Sbjct: 168 KGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 227
Query: 120 ETYRYDSHLNLDARVSQFIGQSGWVFPTHAAAMLVT-IAVEAREVVVDSTLRDEVIWMPS 178
D + L A V++ + H + + + E R + S D V W
Sbjct: 228 HRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--K 284
Query: 179 QNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLA 233
NG+ F KET+ A R +++W VW PK+ + W+A + RL T +
Sbjct: 285 GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRML 344
Query: 234 SWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCIN 293
SW D++CV C ET HLFF C + +W +L K+ Q WE L+ N
Sbjct: 345 SWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTN 403
Query: 294 HFGGLSIAARVGRLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKR 353
G + + R + +WKERN + + ++ + +VR +++++
Sbjct: 404 KSLGHEVPF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI--- 459
Query: 354 FEDTEENRR 362
++E+RR
Sbjct: 460 --QSQEDRR 466
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 148 bits (374), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 173/369 (46%), Gaps = 18/369 (4%)
Query: 1 MGCKRDPIGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQ 60
+ K+ + W ++C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++
Sbjct: 163 LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLR 221
Query: 61 DQHFWILSASRR-SSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFE 119
FW +S + SW W++IL R+ A + + +G NT FW D W G L+D
Sbjct: 222 KGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281
Query: 120 ETYRYDSHLNLDARVSQFIGQSGWVFPTHAAAMLVT-IAVEAREVVVDSTLRDEVIWMPS 178
D + L A V++ + H + + + E R + S D V W
Sbjct: 282 HRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--K 338
Query: 179 QNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLA 233
NG+ F KET+ A R +++W VW PK+ + W+A + RL T +
Sbjct: 339 GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRML 398
Query: 234 SWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCIN 293
SW D++CV C ET HLFF C + +W +L K+ Q WE L+ N
Sbjct: 399 SWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTN 457
Query: 294 HFGGLSIAARVGRLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKR 353
G + + R + +WKERN + + ++ + +VR +++++
Sbjct: 458 KSLGHEVPF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI--- 513
Query: 354 FEDTEENRR 362
++E+RR
Sbjct: 514 --QSQEDRR 520
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 148 bits (374), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/369 (28%), Positives = 173/369 (46%), Gaps = 18/369 (4%)
Query: 1 MGCKRDPIGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQ 60
+ K+ + W ++C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++
Sbjct: 163 LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLR 221
Query: 61 DQHFWILSASRR-SSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFE 119
FW +S + SW W++IL R+ A + + +G NT FW D W G L+D
Sbjct: 222 KGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281
Query: 120 ETYRYDSHLNLDARVSQFIGQSGWVFPTHAAAMLVT-IAVEAREVVVDSTLRDEVIWMPS 178
D + L A V++ + H + + + E R + S D V W
Sbjct: 282 HRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--K 338
Query: 179 QNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLA 233
NG+ F KET+ A R +++W VW PK+ + W+A + RL T +
Sbjct: 339 GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRML 398
Query: 234 SWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCIN 293
SW D++CV C ET HLFF C + +W +L K+ Q WE L+ N
Sbjct: 399 SWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTN 457
Query: 294 HFGGLSIAARVGRLLLNAYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKR 353
G + + R + +WKERN + + ++ + +VR +++++
Sbjct: 458 KSLGHEVPF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI--- 513
Query: 354 FEDTEENRR 362
++E+RR
Sbjct: 514 --QSQEDRR 520
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 139/292 (47%), Gaps = 13/292 (4%)
Query: 1 MGCKRDPIGWENLCYPTDEGGLGFRNIEMLFEASNLRHIWDLVSGKTTLWAEWVRNNLIQ 60
+ K+ + W ++C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++
Sbjct: 163 LNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLR 221
Query: 61 DQHFWILSASRR-SSWCWRRILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFE 119
FW +S + SW W++IL R+ A + + +G NT FW D W G L+D
Sbjct: 222 KGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTG 281
Query: 120 ETYRYDSHLNLDARVSQFIGQSGWVFPTHAAAMLVT-IAVEAREVVVDSTLRDEVIWMPS 178
D + L A V++ + H + + + E R + S D V W
Sbjct: 282 HRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--K 338
Query: 179 QNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLA 233
NG+ F KET+ A R +++W VW PK+ + W+A + RL T +
Sbjct: 339 GNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRML 398
Query: 234 SWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWE 285
SW D++CV C ET HLFF C + + L + FQ + W+
Sbjct: 399 SWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV--PFLTRYTFQLTLHSLWK 448
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 122 bits (305), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 19/285 (6%)
Query: 80 ILASRSTAQRLICTSLGDGYNTKFWTDLWHPRGLLLDAFEETYRYDSHLNLDARVSQFIG 139
+L R A++ + +LG+G FW D W G L+ + + L+ARV + +G
Sbjct: 2 LLFLRPLAEQFVKCNLGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALG 61
Query: 140 QSGWVFPTHAAAMLVTIAVEAREVVVDS--TLRDEVIWMPSQ--NGEFTLKETYEAIRPR 195
+GW P +A I + S T+ D W+ F+ T++AIRPR
Sbjct: 62 VNGWKLPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPR 121
Query: 196 GTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFH 255
L W VW G +PKH F W++ RL TR LASWG + C C + E+ H
Sbjct: 122 APELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDH 181
Query: 256 LFFGCSVTKIIWESLLLKMGFQRVCA-----ADWEGELQWCINHFGGLSIAARVGRLLLN 310
L F C +W ++ F R+C W L W S + + ++ +
Sbjct: 182 LLFSCEFAAQVW-----RLAFSRLCPRQRLFCSWAELLSWM--RSSSSSAPSLLRKVSAH 234
Query: 311 AYGYHIWKERNNKVFRSNVMSPGLIIHTICDEVRIKLNTVTKRFE 355
A Y+IW++RNN + + ++P +I + E+R N ++ R+
Sbjct: 235 AIIYNIWRQRNNVLHNNLRIAPIIIFKIVDREIR---NIISSRYH 276