BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0410.1
(616 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 130 2e-31
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 117 4e-27
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 115 8e-27
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 115 8e-27
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 77 3e-14
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 150/330 (45%), Gaps = 64/330 (19%)
Query: 43 SCFPLAKADFPPLGDSDHSPIIIPLAAPNIHRRTP--FRFFN--------------AWTE 86
S FP A A F G SDHSP II L N+ +R+ FR+F+ AW E
Sbjct: 297 SSFPSAIAVFELSGVSDHSPCIIILE--NLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEE 354
Query: 87 D----------------------------------STFRALVADVRLQG----DPANPVL 108
T AL + +Q +P++ +
Sbjct: 355 QIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLF 414
Query: 109 RRQERVATENYSNVVRTETAMLRQRAKVEWLTLDDSNTAYFHNSIKKRNARNTITRLIRE 168
R E VA + ++ + RQ+++++WL D+NT +FH I A+N I L +
Sbjct: 415 R-VEHVARKKWNFFAAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMD 473
Query: 169 DGSVAEDLVEIANMCVDFYRDLFGRDDEDNEALDHISNVQSSRPL----TEAERALLTLR 224
D E++ ++ M V +Y L G D D D + ++ P T A R L+
Sbjct: 474 DDVRVENVTQVKEMIVAYYTHLLG-SDSDILTPDSVQRIKDIHPFRCNDTLASR--LSAL 530
Query: 225 VTRDEIYAALQTIGSDRSPGPDGLSSHFFKACWSIVGDDFVEAIQNFFSSGKLLKEVNST 284
+ EI AA+ + +++PGPD ++ FF W +V D + A++ FF +G LLK N+T
Sbjct: 531 PSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNAT 590
Query: 285 FVTLFPKIDNASSVSDFRPISCCNVLYKCI 314
+TL PK+ +S FRP+SCC V+YK I
Sbjct: 591 AITLIPKVTGVDQLSMFRPVSCCTVVYKII 620
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 117 bits (293), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 85/130 (65%)
Query: 470 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 529
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 530 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFARRVLLIKVV 589
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFA R+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 590 LNNMLLYWGS 599
++++ +W S
Sbjct: 128 IHSLTNFWMS 137
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 85/130 (65%)
Query: 470 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 529
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 530 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFARRVLLIKVV 589
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFA R+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 590 LNNMLLYWGS 599
++++ +W S
Sbjct: 128 IHSLTNFWMS 137
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 115 bits (287), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 85/130 (65%)
Query: 470 VTHLCFADDLMVFFRGDTGSAQALKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 529
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 530 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFARRVLLIKVV 589
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFA R+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 590 LNNMLLYWGS 599
++++ +W S
Sbjct: 128 IHSLTNFWMS 137
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%)
Query: 517 FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 576
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 577 LSFARRVLLIKVVLNNMLLYWGS 599
LSFA R+ LI V++++ +W S
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMS 83