BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0440.1
(622 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 52 8e-08
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 53 5e-07
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 5e-06
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 5e-06
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 51.6 bits (122), Expect = 8e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 137 MVNGEAHSYFDGKRGLRQGCPIYPYLFVLMMKVFAVLTDREERASRFLLHPKCRV----P 192
++NG RGLRQG P+ PYLF+L +V + L R + R P RV P
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRL---PGIRVSNNSP 69
Query: 193 KATHLCFADD 202
+ HL FADD
Sbjct: 70 RINHLLFADD 79
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 85/196 (43%), Gaps = 11/196 (5%)
Query: 212 GSAQSLKDTGENRRTINRWNLTIALQKPVYTSCKWTRPMTWRNMINIDGALNEV--DAGY 269
Q +DT +++N+ + Q+P KW RP + N DGA N +A
Sbjct: 152 NDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKA 211
Query: 270 GAIIRDSEGNVVRAATGQVDGQTI---FIHELQGAKLGLELALSTGLQEVELGLDSMNIK 326
G ++RD G V +GQ G T E Q + ++ A S G ++V DS ++
Sbjct: 212 GWLMRDENG--VYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVE 269
Query: 327 LLLAKPNQKLPWRARRLWKRVQRLKSQFRSFRVFH-VYREANQAADHLSKMRLGPGVTQL 385
L+ N+KL + R W R R + VF V R NQ AD L+K L P +
Sbjct: 270 ELMN--NEKLNF-GRFNWIREGRFWQKRFEEAVFKWVPRTNNQPADILAKHHLQPNQSFK 326
Query: 386 NASQLPAELVNIVNAD 401
+PA + + + D
Sbjct: 327 FHYYVPAFITSTLYYD 342
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 256 INIDGAL--NEVDAGYGAIIRDSEGNVVRAATGQVDGQTIFIHELQGAKLGLELALSTGL 313
I DGA N AG GA++R S+ +V+ V T + E + LGL AL G
Sbjct: 157 IEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGF 216
Query: 314 QEVELGLDSMNIKLLLAKPNQKLPWRARRLWKRVQRLKSQFRSFRVFHVYREANQAADHL 373
+ V + DSM + + + + + L K+ + L + F++F + H+ RE N AD
Sbjct: 217 KNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQ 276
Query: 374 --SKMRLGPGVTQL 385
S + L G TQ+
Sbjct: 277 ANSAIFLADGQTQV 290
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 256 INIDGAL--NEVDAGYGAIIRDSEGNVVRAATGQVDGQTIFIHELQGAKLGLELALSTGL 313
I DGA N AG GA++R S+ +V+ V T + E + LGL AL G
Sbjct: 157 IEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGF 216
Query: 314 QEVELGLDSMNIKLLLAKPNQKLPWRARRLWKRVQRLKSQFRSFRVFHVYREANQAADHL 373
+ V + DSM + + + + + L K+ + L + F++F + H+ RE N AD
Sbjct: 217 KNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQ 276
Query: 374 --SKMRLGPGVTQL 385
S + L G TQ+
Sbjct: 277 ANSAIFLADGQTQV 290