BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0450.1
(443 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 162 2e-44
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 162 2e-44
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 164 6e-44
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 148 2e-39
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 139 2e-35
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 162 bits (411), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 231 DDLMVFMKGDKSSTLALKEVPDELPTTLGWS-GKSKSSIFFASMDEESRMEVRLALGFQE 289
DDL+VF G KSS + ++ + G KS+I+ A + + + ++ + F
Sbjct: 15 DDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFAS 74
Query: 290 GSLPVRYLGLPLLSTRLSYTDYIPLIQKIISKVQSWKARFLTFAGRLLLVNVVLSSMLIY 349
G+LPVRYLGLPLL+ +++ +DY PL++KI ++ W AR L+FAGRL L++ V+ S+ +
Sbjct: 75 GALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNF 134
Query: 350 WMSVFIFPKRVFKEVNSILYRFIWSGIDLSPKRSSIGWKMMCLPKQEGGLGIRSFETLNI 409
WMS F P KE++SI F+WSG +L+ K++ + W +C PK EGGLGIRS + N
Sbjct: 135 WMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 410 AFNFRHVWEVATGKDTLWVDWVQNNLIRDQNF 441
+ +W + + +LWV W++ L+R +F
Sbjct: 195 VSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSF 225
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 162 bits (411), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 231 DDLMVFMKGDKSSTLALKEVPDELPTTLGWS-GKSKSSIFFASMDEESRMEVRLALGFQE 289
DDL+VF G KSS + ++ + G KS+I+ A + + + ++ + F
Sbjct: 15 DDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFAS 74
Query: 290 GSLPVRYLGLPLLSTRLSYTDYIPLIQKIISKVQSWKARFLTFAGRLLLVNVVLSSMLIY 349
G+LPVRYLGLPLL+ +++ +DY PL++KI ++ W AR L+FAGRL L++ V+ S+ +
Sbjct: 75 GALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNF 134
Query: 350 WMSVFIFPKRVFKEVNSILYRFIWSGIDLSPKRSSIGWKMMCLPKQEGGLGIRSFETLNI 409
WMS F P KE++SI F+WSG +L+ K++ + W +C PK EGGLGIRS + N
Sbjct: 135 WMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 410 AFNFRHVWEVATGKDTLWVDWVQNNLIRDQNF 441
+ +W + + +LWV W++ L+R +F
Sbjct: 195 VSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSF 225
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 164 bits (416), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 129/212 (60%), Gaps = 2/212 (0%)
Query: 231 DDLMVFMKGDKSSTLALKEVPDELPTTLGWS-GKSKSSIFFASMDEESRMEVRLALGFQE 289
DDL+VF G KSS + ++ + G KS+I+ A + + + ++ + F
Sbjct: 15 DDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADILHSFPFAS 74
Query: 290 GSLPVRYLGLPLLSTRLSYTDYIPLIQKIISKVQSWKARFLTFAGRLLLVNVVLSSMLIY 349
G+LPVRYLGLPLL+ +++ +DY PL++KI ++ W AR L+FAGRL L++ V+ S+ +
Sbjct: 75 GALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNF 134
Query: 350 WMSVFIFPKRVFKEVNSILYRFIWSGIDLSPKRSSIGWKMMCLPKQEGGLGIRSFETLNI 409
WMS F P KE++SI F+WSG +L+ K++ + W +C PK EGGLGIRS + N
Sbjct: 135 WMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANK 194
Query: 410 AFNFRHVWEVATGKDTLWVDWVQNNLIRDQNF 441
+ +W + + +LWV W++ L+R +F
Sbjct: 195 VSLLKLIWRMLSST-SLWVQWLRLYLLRKGSF 225
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 148 bits (373), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 270 FASMDEESRMEVRLALGFQEGSLPVRYLGLPLLSTRLSYTDYIPLIQKIISKVQSWKARF 329
A + + + ++ + F G+LPVRYLGLPLL+ +++ +DY PL++KI ++ W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 330 LTFAGRLLLVNVVLSSMLIYWMSVFIFPKRVFKEVNSILYRFIWSGIDLSPKRSSIGWKM 389
L+FAGRL L++ V+ S+ +WMS F P KE++SI F+WSG +L+ K++ + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 390 MCLPKQEGGLGIRSFETLNIAFNFRHVWEVATGKDTLWVDWVQNNLIRDQNF 441
+C PK EGGLGIRS + N + +W + + +LWV W++ L+R +F
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSF 171
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 139 bits (351), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 92/139 (66%)
Query: 270 FASMDEESRMEVRLALGFQEGSLPVRYLGLPLLSTRLSYTDYIPLIQKIISKVQSWKARF 329
A + + + ++ + F G+LPVRYLGLPLL+ +++ +DY PL++KI ++ W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 330 LTFAGRLLLVNVVLSSMLIYWMSVFIFPKRVFKEVNSILYRFIWSGIDLSPKRSSIGWKM 389
L+FAGRL L++ V+ S+ +WMS F P KE++SI F+WSG +L+ K++ + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 390 MCLPKQEGGLGIRSFETLN 408
+C PK EGGLGIRS + N
Sbjct: 121 VCTPKDEGGLGIRSLKEAN 139