BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0470.1
(338 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 61 5e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 60 1e-09
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 60 1e-09
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 59 2e-09
AT3G25720.1 | RNA-directed DNA polymerase (reverse transcriptase... 49 2e-06
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 2 NKAMNLKHIWDLVSNKDTLWVRWVQVNLIKSKDFWLMPVPHDC-SWCWRKVLEGRELARA 60
NK LK IW ++S+ +LWV+W+++ L++ FW + SW W+K+L+ R LA
Sbjct: 193 NKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVTHLIGNGCHTLFWKDIWHPEGLLWD 87
V H I NG +T FW D W G L D
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLID 278
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 2 NKAMNLKHIWDLVSNKDTLWVRWVQVNLIKSKDFWLMPVPHDC-SWCWRKVLEGRELARA 60
NK LK IW ++S+ +LWV+W+++ L++ FW + SW W+K+L+ R LA
Sbjct: 193 NKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVTHLIGNGCHTLFWKDIWHPEGLLWD 87
V H I NG +T FW D W G L D
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLID 278
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 2 NKAMNLKHIWDLVSNKDTLWVRWVQVNLIKSKDFWLMPVPHDC-SWCWRKVLEGRELARA 60
NK LK IW ++S+ +LWV+W+++ L++ FW + SW W+K+L+ R LA
Sbjct: 193 NKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 251
Query: 61 MVTHLIGNGCHTLFWKDIWHPEGLLWD 87
V H I NG +T FW D W G L D
Sbjct: 252 FVKHDIHNGSNTSFWFDNWSKIGRLID 278
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 2 NKAMNLKHIWDLVSNKDTLWVRWVQVNLIKSKDFWLMPVPHDC-SWCWRKVLEGRELARA 60
NK LK IW ++S+ +LWV+W+++ L++ FW + SW W+K+L+ R LA
Sbjct: 139 NKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASG 197
Query: 61 MVTHLIGNGCHTLFWKDIWHPEGLLWD 87
V H I NG +T FW D W G L D
Sbjct: 198 FVKHDIHNGSNTSFWFDNWSKIGRLID 224
>AT3G25720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:9380234-9381405 FORWARD LENGTH=282 | 201606
Length = 282
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 2 NKAMNLKHIWDLVSNKDTLWVRWVQVNLIKS------KDFWLMPVPHDCSWCWRKVLEGR 55
N +NLK +W L S +LWV W + + ++ FW SW W+ +L R
Sbjct: 36 NTTLNLKLVWRLFSGGGSLWVDWHRYHHLQGLGDASVSKFWTSQELVSDSWNWKCLLRLR 95
Query: 56 ELARAMVTHLIGNGCHTLFWKDIWHPEGLLWDSFPEALRYSSFLPANAKVDAIIHNGRWS 115
LA + IGNG FW D W P G L A +P A V W
Sbjct: 96 PLAERFLRCNIGNGLTARFWTDNWTPFGPLLIHIGAARPNRLRIPIEASVADATQGISWG 155
Query: 116 IP 117
+P
Sbjct: 156 LP 157