BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0480.1
(398 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 102 4e-23
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 64 2e-12
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 53 2e-07
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 50 3e-06
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 49 5e-06
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 7/168 (4%)
Query: 10 VPLRKRRLEIVSILFDEDGNKIEQHEDIIERCVEFYRQMLGSDTPSVEEDAILDSIDFKS 69
V L + ++ L +D ++E + E V +Y +LGSD+ + D++ D
Sbjct: 457 VILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIH- 515
Query: 70 PLPVEDMDMLIRPVTR----DEIVFALSTIGSENAPGPDGFSAFFFKKCWNIIGDDVVRV 125
P D L ++ EI A+ + APGPD F+A FF + W ++ D +
Sbjct: 516 --PFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAA 573
Query: 126 VQNFFKSGKLLKEVNSTLVSLIPKVPNASSLTYFRPISCCNVMYKCIT 173
V+ FF++G LLK N+T ++LIPKV L+ FRP+SCC V+YK IT
Sbjct: 574 VKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 63.9 bits (154), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 263 VTHPSYSIVVNGGAHGYFKGKRGLRQGCPISPYLFVMVMEVFSSLIAKVEEEGSF-HLHP 321
V H ++NG G RGLRQG P+SPYLF++ EV S L + +E+G +
Sbjct: 5 VCHFYLLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRV 64
Query: 322 KCKNPKVTHLCFADD 336
+P++ HL FADD
Sbjct: 65 SNNSPRINHLLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 176 LTERFKGVVFSMISENQSAFISGRSIQDNIMLAHEIVRNYHRADGVDKCT-VKIDLRKAY 234
+ ER K ++ ++I Q++FI GR DNI+ E V + R GV +K+DL KAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 235 DTARWSSLMKVLKKFNLPPLFI 256
D RW L L P +++
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWL 82
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 328 VTHLCFADDLMVFMRGDESPVVALRSVLDRFYMGTGLAANTMKSTVFWAGGED-DGFLVR 386
+THLCFADDL+VF G +S + + + +F +GL + KST++ AG +D D +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 387 SILGFEKGELP 397
F G LP
Sbjct: 68 HSFPFASGALP 78
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 328 VTHLCFADDLMVFMRGDESPVVALRSVLDRFYMGTGLAANTMKSTVFWAGGED-DGFLVR 386
+THLCFADDL+VF G +S + + + +F +GL + KST++ AG +D D +
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 387 SILGFEKGELP 397
F G LP
Sbjct: 68 HSFPFASGALP 78