BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0520.1
(286 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 113 2e-29
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 110 3e-29
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 107 6e-27
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 103 6e-26
AT5G16486.1 | RNA-directed DNA polymerase (reverse transcriptase... 87 2e-20
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 113 bits (283), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 10/242 (4%)
Query: 23 FLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYVPRFL 82
F+ +GNGE FW D W G L F + + +V R+G ++P
Sbjct: 11 FMRCDMGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAAR 70
Query: 83 QPDLNTVFSRLHEVAV--HSLNQDRKVWRVSSHGV---YTLKDTYEAIRPRSQTVGWHSI 137
+ + L V S QD +WR ++ ++ +DT+E IR S TV W +
Sbjct: 71 SDNSQLFLAALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKV 130
Query: 138 VWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSCSFAQ 197
VW+ + +P+ S I W++ L TR RL WGM I S+ +C ET +HLF CSF+
Sbjct: 131 VWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSL 190
Query: 198 DLWHRLLADL-GFVWVGFTSFQDAVHWCSRHFHGESVLAKVGRLVFNAIIYHIWQERNNR 256
+W + G + + H ++L +L+ + +YH+W+ERN R
Sbjct: 191 AIWEFFASKFRPSPPFGLPAASSWILQLPLRSHSTTIL----KLLLQSAVYHVWKERNAR 246
Query: 257 VF 258
+F
Sbjct: 247 IF 248
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 110 bits (276), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 116 YTLKDTYEAIRPRSQTVGWHSIVWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVS 175
++ T+ A+RPRS V W VW+ PKH+F W+ + L T+ RL+SWGMQ+ +
Sbjct: 30 FSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMWVTNLDRLPTKTRLASWGMQLQTT 89
Query: 176 YGICGLSIETESHLFSSCSFAQDLWHRLLADLGFVWVGFTSFQDAVHWC-SRHFHGESVL 234
G+C L IE HLF +C FA LWH + L F + D + W R+ L
Sbjct: 90 CGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAFSFVVWNDLMDWTLQRNRRSPPTL 149
Query: 235 AKVGRLVFNAIIYHIWQERNNRVFRQKSLCPAALATIIWDEVRIKSTA 282
K L+ +++Y IW++RNN + +++ P+ + I E++ TA
Sbjct: 150 RK---LIVQSVLYAIWKQRNNFLHNHETILPSVVFKTIDREIKNSITA 194
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 107 bits (268), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 10/244 (4%)
Query: 21 RFFLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYVP- 79
R F++ +G+G FW D+W LG L E + L I+ V LR + ++
Sbjct: 9 RPFIVCEVGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIAS 68
Query: 80 -RFLQPDLNTVFSRLHEVA--VHSLNQDRKVWRVSSHGV---YTLKDTYEAIRPRSQTVG 133
R P + + + L E + + D +W+ H ++ T+ A+ P+S TV
Sbjct: 69 SRSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVP 128
Query: 134 WHSIVWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSC 193
WH VW+ VPKH+FI W+ N L TR RL +WG+ I +C ++ +HLF C
Sbjct: 129 WHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFEC 188
Query: 194 SFAQDLWHRLLADLGFVWVGFTSFQDAVHWCSRHFHGESVLAKVGRLVFNAIIYHIWQER 253
F+ +W A D ++W E + + RL F++ +Y IW+ER
Sbjct: 189 QFSGVVWRFFTASTNL--NPPAQLMDCLNWLLSPSR-EKNICLIIRLAFHSCVYAIWRER 245
Query: 254 NNRV 257
N R+
Sbjct: 246 NQRL 249
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 103 bits (258), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 116/257 (45%), Gaps = 12/257 (4%)
Query: 28 IGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYVPRFLQPDLN 87
+GNG FW D W LG L + + S + +N +V L +P
Sbjct: 17 LGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALGVNGWKLPLSRSAPAQ 76
Query: 88 TVFSRLHEVAVHSLN--QDRKVWRVSSHGV----YTLKDTYEAIRPRSQTVGWHSIVWYS 141
+ + + S +D W V GV ++ T++AIRPR+ + W VW+
Sbjct: 77 AIHDHISTITTPSPATIEDSFDWVVG--GVVCQGFSSARTWDAIRPRAPELDWAKAVWFK 134
Query: 142 QCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFSSCSFAQDLWH 201
VPKH+F W++ + L TR RL+SWG +C + E+ HL SC FA +W
Sbjct: 135 GAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWR 194
Query: 202 RLLADLGFVWVGFTSFQDAVHWC-SRHFHGESVLAKVGRLVFNAIIYHIWQERNNRVFRQ 260
+ L F S+ + + W S S+L KV +AIIY+IW++RNN +
Sbjct: 195 LAFSRLCPRQRLFCSWAELLSWMRSSSSSAPSLLRKVS---AHAIIYNIWRQRNNVLHNN 251
Query: 261 KSLCPAALATIIWDEVR 277
+ P + I+ E+R
Sbjct: 252 LRIAPIIIFKIVDREIR 268
>AT5G16486.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:5383597-5384226 REVERSE LENGTH=209 | 201606
Length = 209
Score = 87.4 bits (215), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 21 RFFLLHIIGNGEDTLFWTDHWHPLGVLYEFFEEQHRYSSFLSINTKVAGFLRDGALYV-- 78
R F++ +G+G FW+++W LG L + S L N VA LRDG ++
Sbjct: 22 REFVVCKVGSGITCNFWSENWTNLGPLIHLTGDLGPRVSGLPRNASVADALRDGVWWING 81
Query: 79 PRFLQPDLNTVFSRLHEVAVHSLNQDRK----VWRVSSHGV---YTLKDTYEAIRPRSQT 131
R P + + + L +V +L D + +W+V ++ T+ + P +
Sbjct: 82 SRSRNPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEK 141
Query: 132 VGWHSIVWYSQCVPKHSFIAWLALNNGLKTRGRLSSWGMQIDVSYGICGLSIETESHLFS 191
V WH +W+ +PKH+FI+W+ + + L TR +L SWG+ + +C ET HLF
Sbjct: 142 VDWHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFF 201
Query: 192 SCSFAQDL 199
C FA ++
Sbjct: 202 DCVFAGEI 209