BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0530.1
(192 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 49 8e-07
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 49 8e-07
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 48 1e-06
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 23/184 (12%)
Query: 6 AVERLNLNVSLSKPNVR------------GYNWSPPPRGWVLVSSDGSLDAGS--AGFGA 51
A E LN N + NV W+PPP GWV + D GS G
Sbjct: 174 ATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGW 233
Query: 52 IVRNDLGAALLMGAAAAVLASILVHELQGVELGLRLAKQV---HS-DCVWVATDSMAVVS 107
+R G +L G A ++ +H LG A QV H VW +DS ++V+
Sbjct: 234 TIRECNGHIVLCGNAKLQSSTCSLH---AEALGFLHALQVIWAHGLRYVWFESDSKSLVT 290
Query: 108 LLSDFEKLPPWIAWLVWMSIKKLWFGFKECHEKHVVREVNQSADFLAKMKLAAELILYAN 167
L+++ E + L++ I+ C + V RE N +AD LA A + + +
Sbjct: 291 LINNGEDH-SLLGTLIY-DIRHWMLKLPYCSLEFVNRERNSAADALASHVHARDPLFQSY 348
Query: 168 SMPP 171
+ PP
Sbjct: 349 TTPP 352
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 17 SKPNVRGYN---WSPPPRGWVLVSSDGS--LDAGSAGFGAIVRNDLGAALLMGAAA-AVL 70
+KP V + W PPP WV ++D + D G G ++RN+ G MGA A L
Sbjct: 408 TKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKL 467
Query: 71 ASILVHELQGVELGLRLAKQVHSDCVWVATDSMAVVSLLSDFEKLP---PWIAWLVWMSI 127
S+L EL+ + + + + V +DS ++ +L++ E P P I +
Sbjct: 468 KSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLKPTI-----QDL 522
Query: 128 KKLWFGFKECHEKHVVREVNQSADFLAKMKLA 159
++L F E + RE N A+ +A+ L+
Sbjct: 523 QRLLSQFTEVKFVFIPREGNTLAERVARESLS 554
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 10/149 (6%)
Query: 25 NWSPPPRGWVLVSSDGS--LDAGSAGFGAIVRNDLGAALLMGAAA-AVLASILVHELQGV 81
W PP WV ++D + L+ G G I+RN+ G L MGA A ++L EL+ +
Sbjct: 136 QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL 195
Query: 82 ELGLRLAKQVHSDCVWVATDSMAVVSLLSDFEKLPPWIAWLVWMSIKKLWFGFKECHEKH 141
+ + + + +D+ A+V+LL+ + P L I++L F+E +
Sbjct: 196 RWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPTLQPAL--EDIQQLLHHFEEVKFEF 253
Query: 142 VVREVNQSADFLAKMKLAAELILYANSMP 170
R N+ AD ++A E I ++N P
Sbjct: 254 TPRGGNKVAD-----RIARESISFSNYDP 277