BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0540.1
(323 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 68 3e-12
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 2e-10
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 61 4e-10
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 60 7e-10
AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 47 5e-06
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 29/276 (10%)
Query: 21 CGLCGEATETVDHLFFQCEFSEALWVKLLAALGCHRPCMSTLEDETQWCIEAFKGDSLMA 80
C C ETV+HL F+C F+ W + ++ W G+
Sbjct: 295 CIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWE 354
Query: 81 RTVGRLTSYHLSQGLLANNR---VFRHKILSCCYSFLIDEVKIRVAIWKCRIELNGQNVA 137
+ +L + L + L NR VFR + + ++ + + W+ R E
Sbjct: 355 K-ASQLVPWLLWR--LWKNRNELVFRGREFNA--QEVLRRAEDDLEEWRIRTE------- 402
Query: 138 FAENWNLNVTMTRRKMKGYRWEPPPSSWVLINSDGSLNRNAA--GYGDVIRNEEGIVLSL 195
AE+ + R RW PPP WV N+D + NR+ G G V+RNE+G V +
Sbjct: 403 -AESCGTKPQVNRSSCG--RWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWM 459
Query: 196 GTRSAPCHTIVLH-ELQGIELGLRLARQHHFEKVMVATDSMAVFRLLSNFELLPPWVAWQ 254
G R+ P VL EL+ + + + + V+ +DS + +L+N E+ P
Sbjct: 460 GARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWP-----S 514
Query: 255 VWPKI---RRLWMEFQCCRVKHVMRELNYVAEYLTK 287
+ P I +RL +F + + RE N +AE + +
Sbjct: 515 LKPTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 119/276 (43%), Gaps = 29/276 (10%)
Query: 21 CGLCGEATETVDHLFFQCEFSEALWVKLLAALGCHRPCMSTLEDETQWCIEAFKGDSLMA 80
C C ++ ETV+HL F+C F+ +W +L W + +
Sbjct: 12 CVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIPKLG 71
Query: 81 RTVGRLTSYHLSQGLLANNRV-FRHKILSCCYSFLIDEVKIRVAI-----WKCRIELNGQ 134
+ +G L + L + + N + F+ K + EV +R A+ W R EL G+
Sbjct: 72 K-IGNLVPWLLWRLWKSRNELMFKGK------EYDAPEV-LRRAMEDFEEWSTRRELEGK 123
Query: 135 NVAFAENWNLNVTMTRRKMKGYRWEPPPSSWVLINSDGS--LNRNAAGYGDVIRNEEGIV 192
NL+V +W+ PP WV N+D + L G G ++RNE G V
Sbjct: 124 ASGPQVERNLSV----------QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGV 173
Query: 193 LSLGTRSAPCHTIVLH-ELQGIELGLRLARQHHFEKVMVATDSMAVFRLLSNFELLPPWV 251
L +G R+ P VL EL+ + + + ++++++ +D+ A+ LL++ + P
Sbjct: 174 LWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWP--T 231
Query: 252 AWQVWPKIRRLWMEFQCCRVKHVMRELNYVAEYLTK 287
I++L F+ + + R N VA+ + +
Sbjct: 232 LQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 112/293 (38%), Gaps = 23/293 (7%)
Query: 2 GGQKATERLRQWGMKVDIYCGLCGEATETVDHLFFQCEFSEALWVKLLAALGCHRPCMST 61
G RLR + D C C ET+ H+ F C +++++W +G S+
Sbjct: 56 GALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSS 115
Query: 62 LEDETQWCIEAFKGDSLMARTVGRLTSYHLSQGLLANNRVFRHKILSCCYSFLIDEVKIR 121
ED I+ K + ++ R + + L + VF + C S + + R
Sbjct: 116 FEDNLNRLIQLSKTQT--TNSLDRFLPFWIMWRLWKSRNVFLFQ--QKCQS---PDYEAR 168
Query: 122 VAIWKCRIELNGQNVAFAENWNLNVT---MTRRKMKGYRWEPPPSSWVLINSDGSLNRNA 178
I LN EN N++V + + +W PPP WV N D + +
Sbjct: 169 KGIQDATEWLNANET--TENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGS 226
Query: 179 --AGYGDVIRNEEGIVLSLGTRSAPCHTIVLH-ELQGIELGLRLARQHHFEKVMVATDSM 235
G IR G ++ G T LH E G L++ H V +DS
Sbjct: 227 PYTRSGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSK 286
Query: 236 AVFRLLSNFE---LLPPWVAWQVWPKIRRLWMEFQCCRVKHVMRELNYVAEYL 285
++ L++N E LL + IR ++ C ++ V RE N A+ L
Sbjct: 287 SLVTLINNGEDHSLLGTLIY-----DIRHWMLKLPYCSLEFVNRERNSAADAL 334
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 40/294 (13%)
Query: 21 CGLCGEATETVDHLFFQCEFSEALWVKLLAALGCHRPCMSTLEDETQWCIEAFKGDSLMA 80
C C + ET HLFF C +++ +W R T+E + + + S +A
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLL-----SSCLA 110
Query: 81 RTVGRLTSYHLSQGLL------ANNRVFRHKILSCCYSFLIDEVKIRVAIWKCRIELNGQ 134
+L ++L+ +L N VF+ K +S + + + V W+
Sbjct: 111 NRQPQL--FNLAIWILWRLWKSRNQLVFQQKSIS--WQNTLQRARNDVQEWE-------D 159
Query: 135 NVAFAENWNLNVTMTRRK---MKGYRWEPPPSSWVLINSDGSLN---RNAAGYGDVIRNE 188
+ ++ N V +R + M +W+ PPS+W+ N DG+ N RNA G ++R+E
Sbjct: 160 TNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKA-GWLMRDE 218
Query: 189 EGIVLSLGTRSAPCHTIVLH-ELQGIELGLRLARQHHFEKVMVATDSMAVFRLLSNFELL 247
G+ + G + L E Q + + ++ A + KV+ DS V L++N +L
Sbjct: 219 NGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEELMNNEKLN 278
Query: 248 PPWVAWQVWPKIR--RLWME-FQCCRVKHVMRELNYVAEYLTK--LRPEAEFEM 296
W IR R W + F+ K V R N A+ L K L+P F+
Sbjct: 279 FGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQPADILAKHHLQPNQSFKF 327
>AT2G46460.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:19071537-19072019 FORWARD
LENGTH=160 | 201606
Length = 160
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 158 WEPPPSSWVLINSDGSLNRN-AAGYGDVIRNEEGIVLSLGTRSAPCHTIVLH-ELQGIEL 215
W PP W N DGS NR + G +IR+E G +S G + + L E Q + +
Sbjct: 3 WTRPPHGWKKCNYDGSYNREMPSKAGWIIRDESGQFVSAGQATGNHTSNALESEFQALLI 62
Query: 216 GLRLARQHHFEKVMVATDSMAVFRLL----SNFELLPPWVAWQVWPKIRRLWME-FQCCR 270
++ H K+ D+ V +L S F++ W + + W + FQ CR
Sbjct: 63 TMQSCWSHGHRKIWFEGDNREVMEILNRRKSRFDIFN-------WIRDVQAWKQRFQECR 115
Query: 271 VKHVMRELNYVAEYLTK 287
+ R+ N A+ L K
Sbjct: 116 FTWINRKQNKPADILAK 132