BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0630.1
(501 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 206 4e-60
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 206 4e-60
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 206 5e-58
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 169 8e-47
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 152 2e-39
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 206 bits (525), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 202/380 (53%), Gaps = 12/380 (3%)
Query: 122 VITHLCFADDLMVFIKGDRDFAAALRSVLDAMFQSTGLTANCNKSSIFFACMEEDWKMEL 181
+ITHLCFADDL+VF G + + + +GL + KS+I+ A ++++ K ++
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 182 KHILGFQEGALPVRYLG-PLLSTKLSYTDCIPMIHKILSRIQSWKARVLTYAGRLLLVNV 240
H F GALPVRYLG PLL+ K++ +D P++ KI RI W AR L++AGRL L++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 241 VLNSMLIYWVSVLTLPKRVYKEINKMFSKFLWNGIEMGSKRTTVKWHIICLPKKEGGLGV 300
V++S+ +W+S LP KEI+ + S FLW+G E+ +K+ V W +C PK EGGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 RNVEVLNLAANMRHVWDVVMGKDTLCVSWVQNNLIKDHNFWLMPAPKDC-SWCWRKVLEC 359
R+++ N + ++ +W ++ +L V W++ L++ +FW + SW W+K+L+
Sbjct: 187 RSLKEANKVSLLKLIWR-MLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 360 RKAGHGLMLVLIGNGDDTLFWADSWHPMGPLHGWFEERFGYSSFLNINTKVASFTRDGHW 419
R G + I NG +T FW D+W +G L R + ++ VA +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN--- 302
Query: 420 YVPEFLSYE-LAEVFSRLSEVHIYSKSQKRLVWRVSPEGD-----YVLKDTYEAIRPRGQ 473
+ P ++ L + ++EV + R GD + K+T+ A R
Sbjct: 303 HRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 474 NVAWERLVWPSNGIPKHCFL 493
V W + VW S+ PK+ L
Sbjct: 363 KVNWYKGVWFSHATPKYSVL 382
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 206 bits (525), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 202/380 (53%), Gaps = 12/380 (3%)
Query: 122 VITHLCFADDLMVFIKGDRDFAAALRSVLDAMFQSTGLTANCNKSSIFFACMEEDWKMEL 181
+ITHLCFADDL+VF G + + + +GL + KS+I+ A ++++ K ++
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 182 KHILGFQEGALPVRYLG-PLLSTKLSYTDCIPMIHKILSRIQSWKARVLTYAGRLLLVNV 240
H F GALPVRYLG PLL+ K++ +D P++ KI RI W AR L++AGRL L++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 241 VLNSMLIYWVSVLTLPKRVYKEINKMFSKFLWNGIEMGSKRTTVKWHIICLPKKEGGLGV 300
V++S+ +W+S LP KEI+ + S FLW+G E+ +K+ V W +C PK EGGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 RNVEVLNLAANMRHVWDVVMGKDTLCVSWVQNNLIKDHNFWLMPAPKDC-SWCWRKVLEC 359
R+++ N + ++ +W ++ +L V W++ L++ +FW + SW W+K+L+
Sbjct: 187 RSLKEANKVSLLKLIWR-MLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 360 RKAGHGLMLVLIGNGDDTLFWADSWHPMGPLHGWFEERFGYSSFLNINTKVASFTRDGHW 419
R G + I NG +T FW D+W +G L R + ++ VA +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN--- 302
Query: 420 YVPEFLSYE-LAEVFSRLSEVHIYSKSQKRLVWRVSPEGD-----YVLKDTYEAIRPRGQ 473
+ P ++ L + ++EV + R GD + K+T+ A R
Sbjct: 303 HRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 474 NVAWERLVWPSNGIPKHCFL 493
V W + VW S+ PK+ L
Sbjct: 363 KVNWYKGVWFSHATPKYSVL 382
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 206 bits (524), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/380 (32%), Positives = 202/380 (53%), Gaps = 12/380 (3%)
Query: 122 VITHLCFADDLMVFIKGDRDFAAALRSVLDAMFQSTGLTANCNKSSIFFACMEEDWKMEL 181
+ITHLCFADDL+VF G + + + +GL + KS+I+ A ++++ K ++
Sbjct: 7 LITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADI 66
Query: 182 KHILGFQEGALPVRYLG-PLLSTKLSYTDCIPMIHKILSRIQSWKARVLTYAGRLLLVNV 240
H F GALPVRYLG PLL+ K++ +D P++ KI RI W AR L++AGRL L++
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 241 VLNSMLIYWVSVLTLPKRVYKEINKMFSKFLWNGIEMGSKRTTVKWHIICLPKKEGGLGV 300
V++S+ +W+S LP KEI+ + S FLW+G E+ +K+ V W +C PK EGGLG+
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGI 186
Query: 301 RNVEVLNLAANMRHVWDVVMGKDTLCVSWVQNNLIKDHNFWLMPAPKDC-SWCWRKVLEC 359
R+++ N + ++ +W ++ +L V W++ L++ +FW + SW W+K+L+
Sbjct: 187 RSLKEANKVSLLKLIWR-MLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKH 245
Query: 360 RKAGHGLMLVLIGNGDDTLFWADSWHPMGPLHGWFEERFGYSSFLNINTKVASFTRDGHW 419
R G + I NG +T FW D+W +G L R + ++ VA +
Sbjct: 246 RALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN--- 302
Query: 420 YVPEFLSYE-LAEVFSRLSEVHIYSKSQKRLVWRVSPEGD-----YVLKDTYEAIRPRGQ 473
+ P ++ L + ++EV + R GD + K+T+ A R
Sbjct: 303 HRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKL 362
Query: 474 NVAWERLVWPSNGIPKHCFL 493
V W + VW S+ PK+ L
Sbjct: 363 KVNWYKGVWFSHATPKYSVL 382
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 169 bits (429), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/336 (31%), Positives = 177/336 (52%), Gaps = 12/336 (3%)
Query: 170 FACMEEDWKMELKHILGFQEGALPVRYLG-PLLSTKLSYTDCIPMIHKILSRIQSWKARV 228
A ++++ K ++ H F GALPVRYLG PLL+ K++ +D P++ KI RI W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 229 LTYAGRLLLVNVVLNSMLIYWVSVLTLPKRVYKEINKMFSKFLWNGIEMGSKRTTVKWHI 288
L++AGRL L++ V++S+ +W+S LP KEI+ + S FLW+G E+ +K+ V W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 289 ICLPKKEGGLGVRNVEVLNLAANMRHVWDVVMGKDTLCVSWVQNNLIKDHNFWLMPAPKD 348
+C PK EGGLG+R+++ N + ++ +W ++ +L V W++ L++ +FW +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWR-MLSSTSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 349 C-SWCWRKVLECRKAGHGLMLVLIGNGDDTLFWADSWHPMGPLHGWFEERFGYSSFLNIN 407
SW W+K+L+ R G + I NG +T FW D+W +G L R + ++
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH 239
Query: 408 TKVASFTRDGHWYVPEFLSYE-LAEVFSRLSEVHIYSKSQKRLVWRVSPEGD-----YVL 461
VA + + P ++ L + ++EV + R GD +
Sbjct: 240 ASVAEAVVN---HRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNT 296
Query: 462 KDTYEAIRPRGQNVAWERLVWPSNGIPKHCFLTCLS 497
K+T+ A R V W + VW S+ PK+ L ++
Sbjct: 297 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIA 332
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 152 bits (385), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 161/331 (48%), Gaps = 38/331 (11%)
Query: 170 FACMEEDWKMELKHILGFQEGALPVRYLG-PLLSTKLSYTDCIPMIHKILSRIQSWKARV 228
A ++++ K ++ H F GALPVRYLG PLL+ K++ +D P++ KI RI W AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 229 LTYAGRLLLVNVVLNSMLIYWVSVLTLPKRVYKEINKMFSKFLWNGIEMGSKRTTVKWHI 288
L++AGRL L++ V++S+ +W+S LP KEI+ + S FLW+G E+ +K+ V W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 289 ICLPKKEGGLGVRNVEVLNLAANMRHVWDVVMGKDTLCVSWVQNNLIKDHNFWLMPAPKD 348
+C PK EGGLG+R+++ AN W + G TL
Sbjct: 121 VCTPKDEGGLGIRSLK----EANKGSFWS-ISGNTTL----------------------- 152
Query: 349 CSWCWRKVLECRKAGHGLMLVLIGNGDDTLFWADSWHPMGPLHGWFEERFGYSSFLNINT 408
SW W+K+L+ R G + I NG +T FW D+W +G L R + ++
Sbjct: 153 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHA 212
Query: 409 KVASFTRDGHWYVPEFLSYE-LAEVFSRLSEVHIYSKSQKRLVWRVSPEGD-----YVLK 462
VA + + P ++ L + ++EV + R GD + K
Sbjct: 213 SVAEAVVN---HRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTK 269
Query: 463 DTYEAIRPRGQNVAWERLVWPSNGIPKHCFL 493
+T+ A R V W + VW S+ PK+ L
Sbjct: 270 ETWAATREPKLKVNWYKGVWFSHATPKYSVL 300