BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0660.1
(253 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 102 2e-26
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 104 2e-25
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 104 2e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 104 2e-25
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 95 1e-22
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 102 bits (255), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 3/182 (1%)
Query: 50 VEIGGTTEDKVVWTASKKGCYTLKETYQKLRPRNDQVDWVSLIWSSLVIPKHGFIAWVAA 109
+EIG + +K+ T+ L P ++VDW IW IPKH FIAWV
Sbjct: 5 MEIGIGYNADPILERNKEIDLEATATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNM 64
Query: 110 HRRLRTCDRLIAWGVDVNPFCVLCRKELETDLHLFFRCVYSLEIWDNFLTLLGIQRQVNN 169
RL T DR+I+WG P C+ C ET HLFF C ++ E+W F + + + +
Sbjct: 65 RHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVWIYFTSRVHVFPPL-- 122
Query: 170 SWEEELSWLLSQLQGSNLKWKMGGLTFTTYVSQIWRERNRRIFQQEDRPAEVVLRMVTSE 229
+E+ + WL + Q N+ + L+ V IW+ERN R+ RPA ++ + S
Sbjct: 123 LFEDGIRWLKNPCQDKNVT-TILRLSHHASVYTIWKERNARLHDSASRPAAALILEIKSV 181
Query: 230 VK 231
++
Sbjct: 182 IR 183
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 104 bits (260), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 18 NARVADVICNGDWHIP----HHVAVHLDDLMGGLAAVEIGGTT--EDKVVWTASK---KG 68
+A VA+ + N H P H + ++D+ +A V G T ED V W + K
Sbjct: 239 HASVAEAVVN---HRPRRHRHDTLLRIEDV---IAEVRHQGLTSGEDTVRWKGNGDIFKP 292
Query: 69 CYTLKETYQKLRPRNDQVDWVSLIWSSLVIPKHGFIAWVAAHRRLRTCDRLIAWGVDVNP 128
C+ KET+ R +V+W +W S PK+ +AW+A RL T DR+++W +
Sbjct: 293 CFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 352
Query: 129 FCVLCRKELETDLHLFFRCVYSLEIWDNFLTLLGIQRQVNNSWEEELSWLLSQLQGSNLK 188
CVLC +ET HLFF C YS E+W LT + + N WE L L ++ G +
Sbjct: 353 SCVLCHHLVETRDHLFFTCPYSAEVWST-LTRKLLSQHFTNRWEAILKLLTNKSLGHEVP 411
Query: 189 WKMGGLTFTTYVSQIWRERNRRIFQQEDRPAEVVLRMVTSEVK 231
+ + TF + +W+ERN R + + A ++R + +V+
Sbjct: 412 F-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVR 453
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 104 bits (260), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 18 NARVADVICNGDWHIP----HHVAVHLDDLMGGLAAVEIGGTT--EDKVVWTASK---KG 68
+A VA+ + N H P H + ++D+ +A V G T ED V W + K
Sbjct: 293 HASVAEAVVN---HRPRRHRHDTLLRIEDV---IAEVRHQGLTSGEDTVRWKGNGDIFKP 346
Query: 69 CYTLKETYQKLRPRNDQVDWVSLIWSSLVIPKHGFIAWVAAHRRLRTCDRLIAWGVDVNP 128
C+ KET+ R +V+W +W S PK+ +AW+A RL T DR+++W +
Sbjct: 347 CFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 129 FCVLCRKELETDLHLFFRCVYSLEIWDNFLTLLGIQRQVNNSWEEELSWLLSQLQGSNLK 188
CVLC +ET HLFF C YS E+W LT + + N WE L L ++ G +
Sbjct: 407 SCVLCHHLVETRDHLFFTCPYSAEVWST-LTRKLLSQHFTNRWEAILKLLTNKSLGHEVP 465
Query: 189 WKMGGLTFTTYVSQIWRERNRRIFQQEDRPAEVVLRMVTSEVK 231
+ + TF + +W+ERN R + + A ++R + +V+
Sbjct: 466 F-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVR 507
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 104 bits (260), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 18 NARVADVICNGDWHIP----HHVAVHLDDLMGGLAAVEIGGTT--EDKVVWTASK---KG 68
+A VA+ + N H P H + ++D+ +A V G T ED V W + K
Sbjct: 293 HASVAEAVVN---HRPRRHRHDTLLRIEDV---IAEVRHQGLTSGEDTVRWKGNGDIFKP 346
Query: 69 CYTLKETYQKLRPRNDQVDWVSLIWSSLVIPKHGFIAWVAAHRRLRTCDRLIAWGVDVNP 128
C+ KET+ R +V+W +W S PK+ +AW+A RL T DR+++W +
Sbjct: 347 CFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADS 406
Query: 129 FCVLCRKELETDLHLFFRCVYSLEIWDNFLTLLGIQRQVNNSWEEELSWLLSQLQGSNLK 188
CVLC +ET HLFF C YS E+W LT + + N WE L L ++ G +
Sbjct: 407 SCVLCHHLVETRDHLFFTCPYSAEVWST-LTRKLLSQHFTNRWEAILKLLTNKSLGHEVP 465
Query: 189 WKMGGLTFTTYVSQIWRERNRRIFQQEDRPAEVVLRMVTSEVK 231
+ + TF + +W+ERN R + + A ++R + +V+
Sbjct: 466 F-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVR 507
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 94.7 bits (234), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 15 LHANARVADVICNGDWHIPHHVAVHLDDLMGGLAAVEIGGTT-----EDKVVW---TASK 66
+ +ARV + NGDW +P A D+ LAA+ + +D +W S
Sbjct: 49 IRQDARVVEASRNGDWFLP---AARSDNSQLFLAALTMAPVPHESRGQDSFLWRNAAGSY 105
Query: 67 KGCYTLKETYQKLRPRNDQVDWVSLIWSSLVIPKHGFIAWVAAHRRLRTCDRLIAWGVDV 126
++ ++T++++R + V W ++W IP+ I W++ RL T DRL WG+++
Sbjct: 106 LPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNI 165
Query: 127 NPFCVLCRKELETDLHLFFRCVYSLEIWDNFLTLLGIQRQVNNSWEEELSWLLSQLQGSN 186
VLC ET HLFF C +SL IW+ F + + SW+L QL +
Sbjct: 166 PSSWVLCSNGDETHAHLFFECSFSLAIWEFFAS--KFRPSPPFGLPAASSWIL-QLPLRS 222
Query: 187 LKWKMGGLTFTTYVSQIWRERNRRIF 212
+ L + V +W+ERN RIF
Sbjct: 223 HSTTILKLLLQSAVYHVWKERNARIF 248