BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0670.1
(106 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-20
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-20
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-20
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 86 1e-20
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 6e-14
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 85.9 bits (211), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 4 YWTSVFVFPKRMFKEINSLFSKFLWAGLQMEGRKALVKWATVCLPFEEGGLGLRDIEIMN 63
+W S F P KEI+S+ S FLW+G ++ +KA V W+ VC P +EGGLG+R ++ N
Sbjct: 80 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139
Query: 64 KATNLRHIWELVSDKDTLWVRWVKGNLIKSKDFWLMSA 101
K + L+ IW ++S +LWV+W++ L++ FW +S
Sbjct: 140 KVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISG 176
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 85.9 bits (211), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 4 YWTSVFVFPKRMFKEINSLFSKFLWAGLQMEGRKALVKWATVCLPFEEGGLGLRDIEIMN 63
+W S F P KEI+S+ S FLW+G ++ +KA V W+ VC P +EGGLG+R ++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 64 KATNLRHIWELVSDKDTLWVRWVKGNLIKSKDFWLMSA 101
K + L+ IW ++S +LWV+W++ L++ FW +S
Sbjct: 194 KVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISG 230
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 85.9 bits (211), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 4 YWTSVFVFPKRMFKEINSLFSKFLWAGLQMEGRKALVKWATVCLPFEEGGLGLRDIEIMN 63
+W S F P KEI+S+ S FLW+G ++ +KA V W+ VC P +EGGLG+R ++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 64 KATNLRHIWELVSDKDTLWVRWVKGNLIKSKDFWLMSA 101
K + L+ IW ++S +LWV+W++ L++ FW +S
Sbjct: 194 KVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISG 230
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 85.5 bits (210), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 4 YWTSVFVFPKRMFKEINSLFSKFLWAGLQMEGRKALVKWATVCLPFEEGGLGLRDIEIMN 63
+W S F P KEI+S+ S FLW+G ++ +KA V W+ VC P +EGGLG+R ++ N
Sbjct: 134 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 193
Query: 64 KATNLRHIWELVSDKDTLWVRWVKGNLIKSKDFWLMSA 101
K + L+ IW ++S +LWV+W++ L++ FW +S
Sbjct: 194 KVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISG 230
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 66.6 bits (161), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 4 YWTSVFVFPKRMFKEINSLFSKFLWAGLQMEGRKALVKWATVCLPFEEGGLGLRDIEIMN 63
+W S F P KEI+S+ S FLW+G ++ +KA V W+ VC P +EGGLG+R ++ N
Sbjct: 80 FWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEAN 139
Query: 64 KAT 66
K +
Sbjct: 140 KGS 142