BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000106.1_g0710.1
         (545 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase...   216   3e-63
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase...   216   3e-63
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase...   208   7e-61
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase...   200   2e-55
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase...   194   1e-53

>AT3G24255.5 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score =  216 bits (550), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 230/482 (47%), Gaps = 54/482 (11%)

Query: 19  KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
           KSTI+ AG+    ++DI     F +G+LP+RYLGLPL++ ++T S   PL++KI+ RI  
Sbjct: 50  KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109

Query: 79  WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
           W +R LSFAGR+ LI  V++S+  +W + F +P   +K+I+SI S FLWSG ++  K+A 
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169

Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
           + W ++C P DEGG LG R+++   + S L+ IW ++S++                    
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228

Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
                            R  A   +   + +G NT FW D W   G L+D        D 
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288

Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
            + L A V++ +         H   + +  +  E R   + S   D V W    NG+   
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345

Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
             F  KET+ A R    +++W   VW     PK+  + W+A + RL T   + SW    D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405

Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 395
           ++CV C    ET  HLFF C  +  +W +L  K+  Q      WE  L+   N   G  +
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEV 464

Query: 396 AARVGRLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEEN 455
              + R      ++ +WKERN R       +   ++  +  +VR  ++++      ++E+
Sbjct: 465 PF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQED 518

Query: 456 RR 457
           RR
Sbjct: 519 RR 520


>AT3G24255.4 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
          Length = 532

 Score =  216 bits (550), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 230/482 (47%), Gaps = 54/482 (11%)

Query: 19  KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
           KSTI+ AG+    ++DI     F +G+LP+RYLGLPL++ ++T S   PL++KI+ RI  
Sbjct: 50  KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109

Query: 79  WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
           W +R LSFAGR+ LI  V++S+  +W + F +P   +K+I+SI S FLWSG ++  K+A 
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169

Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
           + W ++C P DEGG LG R+++   + S L+ IW ++S++                    
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228

Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
                            R  A   +   + +G NT FW D W   G L+D        D 
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288

Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
            + L A V++ +         H   + +  +  E R   + S   D V W    NG+   
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345

Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
             F  KET+ A R    +++W   VW     PK+  + W+A + RL T   + SW    D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405

Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 395
           ++CV C    ET  HLFF C  +  +W +L  K+  Q      WE  L+   N   G  +
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEV 464

Query: 396 AARVGRLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEEN 455
              + R      ++ +WKERN R       +   ++  +  +VR  ++++      ++E+
Sbjct: 465 PF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQED 518

Query: 456 RR 457
           RR
Sbjct: 519 RR 520


>AT3G24255.3 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
          Length = 478

 Score =  208 bits (530), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 225/477 (47%), Gaps = 54/477 (11%)

Query: 24  FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 83
            AG+    ++DI     F +G+LP+RYLGLPL++ ++T S   PL++KI+ RI  W +R 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 84  LSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAPIGWEN 143
           LSFAGR+ LI  V++S+  +W + F +P   +K+I+SI S FLWSG ++  K+A + W +
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 144 LCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS------------------------- 178
           +C P DEGG LG R+++   + S L+ IW ++S++                         
Sbjct: 121 VCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT 179

Query: 179 ------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDSHLNLD 226
                       R  A   +   + +G NT FW D W   G L+D        D  + L 
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH 239

Query: 227 ARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE-----FTL 280
           A V++ +         H   + +  +  E R   + S   D V W    NG+     F  
Sbjct: 240 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNT 296

Query: 281 KETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVF 340
           KET+ A R    +++W   VW     PK+  + W+A + RL T   + SW    D++CV 
Sbjct: 297 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 356

Query: 341 CGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSIAARVG 400
           C    ET  HLFF C  +  +W +L  K+  Q      WE  L+   N   G  +   + 
Sbjct: 357 CHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEVPF-LT 414

Query: 401 RLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEENRR 457
           R      ++ +WKERN R       +   ++  +  +VR  ++++      ++E+RR
Sbjct: 415 RYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQEDRR 466


>AT3G24255.7 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
          Length = 828

 Score =  200 bits (509), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 196/405 (48%), Gaps = 49/405 (12%)

Query: 19  KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
           KSTI+ AG+    ++DI     F +G+LP+RYLGLPL++ ++T S   PL++KI+ RI  
Sbjct: 50  KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109

Query: 79  WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
           W +R LSFAGR+ LI  V++S+  +W + F +P   +K+I+SI S FLWSG ++  K+A 
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169

Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
           + W ++C P DEGG LG R+++   + S L+ IW ++S++                    
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228

Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
                            R  A   +   + +G NT FW D W   G L+D        D 
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288

Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
            + L A V++ +         H   + +  +  E R   + S   D V W    NG+   
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345

Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
             F  KET+ A R    +++W   VW     PK+  + W+A + RL T   + SW    D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405

Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWE 380
           ++CV C    ET  HLFF C  +  +    L +  FQ    + W+
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEV--PFLTRYTFQLTLHSLWK 448


>AT3G24255.1 | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
          Length = 746

 Score =  194 bits (493), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 186/372 (50%), Gaps = 21/372 (5%)

Query: 24  FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 83
            AG+    ++DI     F +G+LP+RYLGLPL++ ++T S   PL++KI+ RI  W +R 
Sbjct: 1   MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60

Query: 84  LSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAPIGWEN 143
           LSFAGR+ LI  V++S+  +W + F +P   +K+I+SI S FLWSG ++  K+A + W +
Sbjct: 61  LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120

Query: 144 LCYPTDEGGLLGFRNIEMLFEAS------NLRH---IWDLVSASRPTAQRLICTSLGDGH 194
           +C P DEGG LG R+++   + S      N      +W  +   R  A   +   + +G 
Sbjct: 121 VCTPKDEGG-LGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGS 179

Query: 195 NTKFWTDLWHPRGLLLDAFEETHRYDSHLNLDARVSQFIGQSGWVFPTHVAAM-LGTITV 253
           NT FW D W   G L+D        D  + L A V++ +         H   + +  +  
Sbjct: 180 NTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIA 239

Query: 254 EAREVVVDSTLRDEVIWMPSQNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPK 308
           E R   + S   D V W    NG+     F  KET+ A R    +++W   VW     PK
Sbjct: 240 EVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPK 296

Query: 309 HCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLK 368
           +  + W+A + RL T   + SW    D++CV C    ET  HLFF C  +  +    L +
Sbjct: 297 YSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV--PFLTR 354

Query: 369 MGFQRVCAADWE 380
             FQ    + W+
Sbjct: 355 YTFQLTLHSLWK 366


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