BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0710.1
(545 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 216 3e-63
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 216 3e-63
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 208 7e-61
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 200 2e-55
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 194 1e-53
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 216 bits (550), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 230/482 (47%), Gaps = 54/482 (11%)
Query: 19 KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
KSTI+ AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI
Sbjct: 50 KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109
Query: 79 WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
W +R LSFAGR+ LI V++S+ +W + F +P +K+I+SI S FLWSG ++ K+A
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169
Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
+ W ++C P DEGG LG R+++ + S L+ IW ++S++
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228
Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
R A + + +G NT FW D W G L+D D
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288
Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
+ L A V++ + H + + + E R + S D V W NG+
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345
Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
F KET+ A R +++W VW PK+ + W+A + RL T + SW D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405
Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 395
++CV C ET HLFF C + +W +L K+ Q WE L+ N G +
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEV 464
Query: 396 AARVGRLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEEN 455
+ R ++ +WKERN R + ++ + +VR ++++ ++E+
Sbjct: 465 PF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQED 518
Query: 456 RR 457
RR
Sbjct: 519 RR 520
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 216 bits (550), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/482 (29%), Positives = 230/482 (47%), Gaps = 54/482 (11%)
Query: 19 KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
KSTI+ AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI
Sbjct: 50 KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109
Query: 79 WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
W +R LSFAGR+ LI V++S+ +W + F +P +K+I+SI S FLWSG ++ K+A
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169
Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
+ W ++C P DEGG LG R+++ + S L+ IW ++S++
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228
Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
R A + + +G NT FW D W G L+D D
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288
Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
+ L A V++ + H + + + E R + S D V W NG+
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345
Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
F KET+ A R +++W VW PK+ + W+A + RL T + SW D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405
Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSI 395
++CV C ET HLFF C + +W +L K+ Q WE L+ N G +
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEV 464
Query: 396 AARVGRLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEEN 455
+ R ++ +WKERN R + ++ + +VR ++++ ++E+
Sbjct: 465 PF-LTRYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQED 518
Query: 456 RR 457
RR
Sbjct: 519 RR 520
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 208 bits (530), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 140/477 (29%), Positives = 225/477 (47%), Gaps = 54/477 (11%)
Query: 24 FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 83
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 84 LSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAPIGWEN 143
LSFAGR+ LI V++S+ +W + F +P +K+I+SI S FLWSG ++ K+A + W +
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 144 LCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS------------------------- 178
+C P DEGG LG R+++ + S L+ IW ++S++
Sbjct: 121 VCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 179 ------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDSHLNLD 226
R A + + +G NT FW D W G L+D D + L
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH 239
Query: 227 ARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE-----FTL 280
A V++ + H + + + E R + S D V W NG+ F
Sbjct: 240 ASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNT 296
Query: 281 KETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTTCVF 340
KET+ A R +++W VW PK+ + W+A + RL T + SW D++CV
Sbjct: 297 KETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVL 356
Query: 341 CGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWEGELQWCINHFGGLSIAARVG 400
C ET HLFF C + +W +L K+ Q WE L+ N G + +
Sbjct: 357 CHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHF-TNRWEAILKLLTNKSLGHEVPF-LT 414
Query: 401 RLLLNAYVYHIWKERNNRVFRSNVMSPGLIIYTICDEVRITLNTVTKRFEDTEENRR 457
R ++ +WKERN R + ++ + +VR ++++ ++E+RR
Sbjct: 415 RYTFQLTLHSLWKERNGRRHGEVPQAAAQMVRFLDKQVRNRISSI-----QSQEDRR 466
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 200 bits (509), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/405 (31%), Positives = 196/405 (48%), Gaps = 49/405 (12%)
Query: 19 KSTIFFAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQS 78
KSTI+ AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI
Sbjct: 50 KSTIYMAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGK 109
Query: 79 WKSRFLSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAP 138
W +R LSFAGR+ LI V++S+ +W + F +P +K+I+SI S FLWSG ++ K+A
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169
Query: 139 IGWENLCYPTDEGGLLGFRNIEMLFEASNLRHIWDLVSAS-------------------- 178
+ W ++C P DEGG LG R+++ + S L+ IW ++S++
Sbjct: 170 VAWSDVCTPKDEGG-LGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSI 228
Query: 179 -----------------RPTAQRLICTSLGDGHNTKFWTDLWHPRGLLLDAFEETHRYDS 221
R A + + +G NT FW D W G L+D D
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDM 288
Query: 222 HLNLDARVSQFIGQSGWVFPTHVAAM-LGTITVEAREVVVDSTLRDEVIWMPSQNGE--- 277
+ L A V++ + H + + + E R + S D V W NG+
Sbjct: 289 GITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW--KGNGDIFK 345
Query: 278 --FTLKETYEAIRPRGTRLSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVID 335
F KET+ A R +++W VW PK+ + W+A + RL T + SW D
Sbjct: 346 PCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGAD 405
Query: 336 TTCVFCGGDEETDFHLFFGCSVTKIIWESLLLKMGFQRVCAADWE 380
++CV C ET HLFF C + + L + FQ + W+
Sbjct: 406 SSCVLCHHLVETRDHLFFTCPYSAEV--PFLTRYTFQLTLHSLWK 448
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 194 bits (493), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 186/372 (50%), Gaps = 21/372 (5%)
Query: 24 FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 83
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 84 LSFAGRVLLIKVVLNSMLLYWAAVFVIPKRVMKDINSIFSKFLWSGADMGCKRAPIGWEN 143
LSFAGR+ LI V++S+ +W + F +P +K+I+SI S FLWSG ++ K+A + W +
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 144 LCYPTDEGGLLGFRNIEMLFEAS------NLRH---IWDLVSASRPTAQRLICTSLGDGH 194
+C P DEGG LG R+++ + S N +W + R A + + +G
Sbjct: 121 VCTPKDEGG-LGIRSLKEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGS 179
Query: 195 NTKFWTDLWHPRGLLLDAFEETHRYDSHLNLDARVSQFIGQSGWVFPTHVAAM-LGTITV 253
NT FW D W G L+D D + L A V++ + H + + +
Sbjct: 180 NTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIA 239
Query: 254 EAREVVVDSTLRDEVIWMPSQNGE-----FTLKETYEAIRPRGTRLSWTSLVWSPGGIPK 308
E R + S D V W NG+ F KET+ A R +++W VW PK
Sbjct: 240 EVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPK 296
Query: 309 HCFITWLAFRRRLKTRSLLASWGMVIDTTCVFCGGDEETDFHLFFGCSVTKIIWESLLLK 368
+ + W+A + RL T + SW D++CV C ET HLFF C + + L +
Sbjct: 297 YSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV--PFLTR 354
Query: 369 MGFQRVCAADWE 380
FQ + W+
Sbjct: 355 YTFQLTLHSLWK 366