BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0770.1
(625 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 221 2e-64
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 221 2e-64
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 215 6e-60
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 180 8e-50
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 169 3e-44
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 221 bits (564), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 230/460 (50%), Gaps = 54/460 (11%)
Query: 203 ITHLCFADDLMVFFRGDAGSAQSLKGVLTGFHRATGLQTNVTKSTVFFAGLSAQGQSDIT 262
ITHLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 263 SILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 322
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 323 LNSMLLYWAAVFVIPKRVINDINSIFNKFLWSGVDMGCKRAPIGWESLCYPTDEKGLGFR 382
++S+ +W + F +P I +I+SI + FLWSG ++ K+A + W +C P DE GLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 383 NIEVLFEASNLRHIWDLVSGRRL-----------NDSFALLSGTVMIPNFGLIWHPRGLL 431
+++ + S L+ IW ++S L SF +SG + ++ +W + L
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSW--MW-KKILK 244
Query: 432 YDAFTEGY-RYDSH------LYLD--ARVSQFIGQSGWVFPTHITAMLGAIAAEA----- 477
+ A G+ ++D H + D +++ + I +G + L A AEA
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR 304
Query: 478 ------------REVVVD------STLGDEVIWMPSQNGE-----FTLKETYEAIRPRGT 514
+V+ + ++ D V W NG+ F KET+ A R
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETWAATREPKL 362
Query: 515 RRSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTSCVFYGGDEETNFHLF 574
+ +W VW PK+ + W+A + RL T + SW D+SCV ET HLF
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 575 FGCSVIKTIWESLLHKMGFQRVCSVDWEEELQWCLNHFVG 614
F C +W +L K+ Q + WE L+ N +G
Sbjct: 423 FTCPYSAEVWSTLTRKLLSQHFTN-RWEAILKLLTNKSLG 461
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 221 bits (564), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/460 (31%), Positives = 230/460 (50%), Gaps = 54/460 (11%)
Query: 203 ITHLCFADDLMVFFRGDAGSAQSLKGVLTGFHRATGLQTNVTKSTVFFAGLSAQGQSDIT 262
ITHLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 263 SILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 322
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 323 LNSMLLYWAAVFVIPKRVINDINSIFNKFLWSGVDMGCKRAPIGWESLCYPTDEKGLGFR 382
++S+ +W + F +P I +I+SI + FLWSG ++ K+A + W +C P DE GLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 383 NIEVLFEASNLRHIWDLVSGRRL-----------NDSFALLSGTVMIPNFGLIWHPRGLL 431
+++ + S L+ IW ++S L SF +SG + ++ +W + L
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSW--MW-KKILK 244
Query: 432 YDAFTEGY-RYDSH------LYLD--ARVSQFIGQSGWVFPTHITAMLGAIAAEA----- 477
+ A G+ ++D H + D +++ + I +G + L A AEA
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR 304
Query: 478 ------------REVVVD------STLGDEVIWMPSQNGE-----FTLKETYEAIRPRGT 514
+V+ + ++ D V W NG+ F KET+ A R
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETWAATREPKL 362
Query: 515 RRSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTSCVFYGGDEETNFHLF 574
+ +W VW PK+ + W+A + RL T + SW D+SCV ET HLF
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 575 FGCSVIKTIWESLLHKMGFQRVCSVDWEEELQWCLNHFVG 614
F C +W +L K+ Q + WE L+ N +G
Sbjct: 423 FTCPYSAEVWSTLTRKLLSQHFTN-RWEAILKLLTNKSLG 461
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 215 bits (547), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/449 (31%), Positives = 223/449 (49%), Gaps = 55/449 (12%)
Query: 203 ITHLCFADDLMVFFRGDAGSAQSLKGVLTGFHRATGLQTNVTKSTVFFAGLSAQGQSDIT 262
ITHLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 263 SILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 322
F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 323 LNSMLLYWAAVFVIPKRVINDINSIFNKFLWSGVDMGCKRAPIGWESLCYPTDEKGLGFR 382
++S+ +W + F +P I +I+SI + FLWSG ++ K+A + W +C P DE GLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 383 NIEVLFEASNLRHIWDLVSGRRL-----------NDSFALLSGTVMIPNFGLIWHPRGLL 431
+++ + S L+ IW ++S L SF +SG + ++ +W + L
Sbjct: 188 SLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTLGSW--MW-KKILK 244
Query: 432 YDAFTEGY-RYDSH------LYLD--ARVSQFIGQSGWVFPTHITAMLGAIAAEA----- 477
+ A G+ ++D H + D +++ + I +G + L A AEA
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHR 304
Query: 478 ------------REVVVD------STLGDEVIWMPSQNGE-----FTLKETYEAIRPRGT 514
+V+ + ++ D V W NG+ F KET+ A R
Sbjct: 305 PRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFNTKETWAATREPKL 362
Query: 515 RRSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTSCVFYGGDEETNFHLF 574
+ +W VW PK+ + W+A + RL T + SW D+SCV ET HLF
Sbjct: 363 KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLF 422
Query: 575 FGCSVIKTIWESLLHKMGFQRVCSVDWEE 603
F C + L + FQ W+E
Sbjct: 423 FTCPYSAEV--PFLTRYTFQLTLHSLWKE 449
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 180 bits (457), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 200/413 (48%), Gaps = 54/413 (13%)
Query: 250 FAGLSAQGQSDITSILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 309
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 310 LSFAGRVLLVKVVLNSMLLYWAAVFVIPKRVINDINSIFNKFLWSGVDMGCKRAPIGWES 369
LSFAGR+ L+ V++S+ +W + F +P I +I+SI + FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 370 LCYPTDEKGLGFRNIEVLFEASNLRHIWDLVSGRRL-----------NDSFALLSGTVMI 418
+C P DE GLG R+++ + S L+ IW ++S L SF +SG +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQWLRLYLLRKGSFWSISGNTTL 180
Query: 419 PNFGLIWHPRGLLYDAFTEGY-RYDSH------LYLD--ARVSQFIGQSGWVFPTHITAM 469
++ +W + L + A G+ ++D H + D +++ + I +G +
Sbjct: 181 GSW--MW-KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGIT 237
Query: 470 LGAIAAEA-----------------REVVVD------STLGDEVIWMPSQNGE-----FT 501
L A AEA +V+ + ++ D V W NG+ F
Sbjct: 238 LHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW--KGNGDIFKPCFN 295
Query: 502 LKETYEAIRPRGTRRSWTSLVWSPGGIPKHCFITWLAFRRRLKTRSLLASWGMVIDTSCV 561
KET+ A R + +W VW PK+ + W+A + RL T + SW D+SCV
Sbjct: 296 TKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 355
Query: 562 FYGGDEETNFHLFFGCSVIKTIWESLLHKMGFQRVCSVDWEEELQWCLNHFVG 614
ET HLFF C +W +L K+ Q + WE L+ N +G
Sbjct: 356 LCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTN-RWEAILKLLTNKSLG 407
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 169 bits (428), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 178/376 (47%), Gaps = 31/376 (8%)
Query: 250 FAGLSAQGQSDITSILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 309
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 310 LSFAGRVLLVKVVLNSMLLYWAAVFVIPKRVINDINSIFNKFLWSGVDMGCKRAPIGWES 369
LSFAGR+ L+ V++S+ +W + F +P I +I+SI + FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 370 LCYPTDEKGLGFRNIEVLFEASNLRHIWDLVSG--------RRLNDSFALLSGTVM--IP 419
+C P DE GLG R++ + +N W + +++ AL SG V I
Sbjct: 121 VCTPKDEGGLGIRSL----KEANKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIH 176
Query: 420 NFGLI------WHPRGLLYDAFTEGYRYDSHLYLDARVSQFIGQSGWVFPTHITAM-LGA 472
N W G L D D + L A V++ + H T + +
Sbjct: 177 NGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIED 236
Query: 473 IAAEAREVVVDSTLGDEVIWMPSQNGE-----FTLKETYEAIRPRGTRRSWTSLVWSPGG 527
+ AE R + S D V W NG+ F KET+ A R + +W VW
Sbjct: 237 VIAEVRHQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHA 293
Query: 528 IPKHCFITWLAFRRRLKTRSLLASWGMVIDTSCVFYGGDEETNFHLFFGCSVIKTIWESL 587
PK+ + W+A + RL T + SW D+SCV ET HLFF C +
Sbjct: 294 TPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEV--PF 351
Query: 588 LHKMGFQRVCSVDWEE 603
L + FQ W+E
Sbjct: 352 LTRYTFQLTLHSLWKE 367