BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0780.1
(582 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 203 4e-58
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 203 4e-58
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 204 1e-56
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 164 5e-44
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 136 2e-33
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 203 bits (517), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 58 VTHLCFADDLMVFFRGDAGSAKSLKGVLTGFHRATGLQTNVLKSTVFFAGLSAQGQSDIT 117
+THLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGTGSLPIRYLGLPLISSRLTYSHCISLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 177
F +G+LP+RYLGLPL++ ++T S L++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAEFVIPKRVINDINSIFSKFLCSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FL SG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASRR-SSWCWRRILANR 296
+++ + S L+ IW ++S T+LW +W+R L++ FW++S + SW W++IL +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 297 PTAQRLICTSLGDGHPRGLLYDAFAE-GYRYDSHLHLDARDNIMLVH----EIVRNYHRP 351
A + + +G +D +++ G D H D + +H E V N HRP
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN-HRP 305
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 461 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFVGLSAQGQSDIT 520
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ G+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 521 TILEFGTGSLPIQYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGR 573
F +G+LP++YLGLPL++ ++T S PL++KI+ RI W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGR 120
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 203 bits (517), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 58 VTHLCFADDLMVFFRGDAGSAKSLKGVLTGFHRATGLQTNVLKSTVFFAGLSAQGQSDIT 117
+THLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGTGSLPIRYLGLPLISSRLTYSHCISLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 177
F +G+LP+RYLGLPL++ ++T S L++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAEFVIPKRVINDINSIFSKFLCSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FL SG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASRR-SSWCWRRILANR 296
+++ + S L+ IW ++S T+LW +W+R L++ FW++S + SW W++IL +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 297 PTAQRLICTSLGDGHPRGLLYDAFAE-GYRYDSHLHLDARDNIMLVH----EIVRNYHRP 351
A + + +G +D +++ G D H D + +H E V N HRP
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN-HRP 305
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 461 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFVGLSAQGQSDIT 520
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ G+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 521 TILEFGTGSLPIQYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGR 573
F +G+LP++YLGLPL++ ++T S PL++KI+ RI W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGR 120
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 204 bits (520), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 177/300 (59%), Gaps = 8/300 (2%)
Query: 58 VTHLCFADDLMVFFRGDAGSAKSLKGVLTGFHRATGLQTNVLKSTVFFAGLSAQGQSDIT 117
+THLCFADDL+VF G S + + + F +GLQ ++ KST++ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 118 SILEFGTGSLPIRYLGLPLISSRLTYSHCISLIDKIKGRIQSWKSRFLSFAGRVLLVKVV 177
F +G+LP+RYLGLPL++ ++T S L++KI+ RI W +R LSFAGR+ L+ V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 178 LNSMLLYWAAEFVIPKRVINDINSIFSKFLCSGVDMGCKRAPIGWESLCYPTDEGGLGFR 237
++S+ +W + F +P I +I+SI S FL SG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 238 NIEVLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASRR-SSWCWRRILANR 296
+++ + S L+ IW ++S T+LW +W+R L++ FW++S + SW W++IL +R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 297 PTAQRLICTSLGDGHPRGLLYDAFAE-GYRYDSHLHLDARDNIMLVH----EIVRNYHRP 351
A + + +G +D +++ G D H D + +H E V N HRP
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVN-HRP 305
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 74/113 (65%)
Query: 461 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFVGLSAQGQSDIT 520
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ G+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 521 TILEFGTGSLPIQYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRFLSFAGR 573
F +G+LP++YLGLPL++ ++T S PL++KI+ RI W +R LSFAGR
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGR 120
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 164 bits (414), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 147/253 (58%), Gaps = 8/253 (3%)
Query: 105 FAGLSAQGQSDITSILEFGTGSLPIRYLGLPLISSRLTYSHCISLIDKIKGRIQSWKSRF 164
AG+ ++DI F +G+LP+RYLGLPL++ ++T S L++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 165 LSFAGRVLLVKVVLNSMLLYWAAEFVIPKRVINDINSIFSKFLCSGVDMGCKRAPIGWES 224
LSFAGR+ L+ V++S+ +W + F +P I +I+SI S FL SG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 225 LCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASRR 284
+C P DEGGLG R+++ + S L+ IW ++S T+LW +W+R L++ FW++S +
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 285 -SSWCWRRILANRPTAQRLICTSLGDGHPRGLLYDAFAE-GYRYDSHLHLDARDNIMLVH 342
SW W++IL +R A + + +G +D +++ G D H D + +H
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLH 239
Query: 343 ----EIVRNYHRP 351
E V N HRP
Sbjct: 240 ASVAEAVVN-HRP 251
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 508 FVGLSAQGQSDITTILEFGTGSLPIQYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 567
G+ ++DI F +G+LP++YLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 568 LSFAGR 573
LSFAGR
Sbjct: 61 LSFAGR 66
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 28/218 (12%)
Query: 105 FAGLSAQGQSDITSILEFGTGSLPIRYLGLPLISSRLTYSHCISLIDKIKGRIQSWKSRF 164
AG+ ++DI F +G+LP+RYLGLPL++ ++T S L++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 165 LSFAGRVLLVKVVLNSMLLYWAAEFVIPKRVINDINSIFSKFLCSGVDMGCKRAPIGWES 224
LSFAGR+ L+ V++S+ +W + F +P I +I+SI S FL SG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 225 LCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSGKTTLWAEWVRNNLIKDQHFWTLSASRR 284
+C P DEGGLG R++ + +N W +SG TTL
Sbjct: 121 VCTPKDEGGLGIRSL----KEANKGSFWS-ISGNTTL----------------------- 152
Query: 285 SSWCWRRILANRPTAQRLICTSLGDGHPRGLLYDAFAE 322
SW W++IL +R A + + +G +D +++
Sbjct: 153 GSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSK 190
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 508 FVGLSAQGQSDITTILEFGTGSLPIQYLGLPLISSRLTYSHCIPLIDKIKGRIQSWKSRF 567
G+ ++DI F +G+LP++YLGLPL++ ++T S PL++KI+ RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 568 LSFAGR 573
LSFAGR
Sbjct: 61 LSFAGR 66