BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0790.1
(547 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 168 5e-46
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 169 1e-45
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 169 1e-45
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 152 7e-39
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 123 2e-31
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 168 bits (426), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 18/386 (4%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
+ +I+SI S F WSG ++ K+A + W +C P DEGGLG R+++ + S L+ IW ++
Sbjct: 92 IKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRML 151
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSR-SSWCWRRILASRPMALRLICTSLGDGHDTK 119
S +LW W+R L++ FW++S ++ SW W++IL R +A + + +G +T
Sbjct: 152 SST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTS 210
Query: 120 FWTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFPIHVAAM-LGNIEVEAR 178
FW D W G L D D + L A V++ + H + + ++ E R
Sbjct: 211 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 270
Query: 179 EVVVDSTLRDEVIWTPSQNGE-----FTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCF 233
+ S D V W NG+ F KET+ A R +++W VW PK+
Sbjct: 271 HQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSV 327
Query: 234 ITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGY 293
+ W+A + RL T + SW D+SCV C ET HLFF CP + +W +L K+
Sbjct: 328 LAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLS 387
Query: 294 QRVSAADWEGELQWCINHFGG--ISIAARVGLMLLNAYVYHIWKERNNRVFRSNVMSPEL 351
Q + WE L+ N G + R L ++ +WKERN R +
Sbjct: 388 QHFT-NRWEAILKLLTNKSLGHEVPFLTRYTFQLT---LHSLWKERNGRRHGEVPQAAAQ 443
Query: 352 IIHTICDEVRIKLNTVTKRFEDTEEN 377
++ + +VR +++++ + ED N
Sbjct: 444 MVRFLDKQVRNRISSIQSQ-EDRRYN 468
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 169 bits (427), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 18/386 (4%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
+ +I+SI S F WSG ++ K+A + W +C P DEGGLG R+++ + S L+ IW ++
Sbjct: 146 IKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRML 205
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSR-SSWCWRRILASRPMALRLICTSLGDGHDTK 119
S +LW W+R L++ FW++S ++ SW W++IL R +A + + +G +T
Sbjct: 206 SST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTS 264
Query: 120 FWTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFPIHVAAM-LGNIEVEAR 178
FW D W G L D D + L A V++ + H + + ++ E R
Sbjct: 265 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 324
Query: 179 EVVVDSTLRDEVIWTPSQNGE-----FTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCF 233
+ S D V W NG+ F KET+ A R +++W VW PK+
Sbjct: 325 HQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSV 381
Query: 234 ITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGY 293
+ W+A + RL T + SW D+SCV C ET HLFF CP + +W +L K+
Sbjct: 382 LAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLS 441
Query: 294 QRVSAADWEGELQWCINHFGG--ISIAARVGLMLLNAYVYHIWKERNNRVFRSNVMSPEL 351
Q + WE L+ N G + R L ++ +WKERN R +
Sbjct: 442 QHFTNR-WEAILKLLTNKSLGHEVPFLTRYTFQLT---LHSLWKERNGRRHGEVPQAAAQ 497
Query: 352 IIHTICDEVRIKLNTVTKRFEDTEEN 377
++ + +VR +++++ + ED N
Sbjct: 498 MVRFLDKQVRNRISSIQSQ-EDRRYN 522
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 169 bits (427), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 186/386 (48%), Gaps = 18/386 (4%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
+ +I+SI S F WSG ++ K+A + W +C P DEGGLG R+++ + S L+ IW ++
Sbjct: 146 IKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRML 205
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSR-SSWCWRRILASRPMALRLICTSLGDGHDTK 119
S +LW W+R L++ FW++S ++ SW W++IL R +A + + +G +T
Sbjct: 206 SST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTS 264
Query: 120 FWTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFPIHVAAM-LGNIEVEAR 178
FW D W G L D D + L A V++ + H + + ++ E R
Sbjct: 265 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 324
Query: 179 EVVVDSTLRDEVIWTPSQNGE-----FTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCF 233
+ S D V W NG+ F KET+ A R +++W VW PK+
Sbjct: 325 HQGLTSG-EDTVRW--KGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSV 381
Query: 234 ITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGY 293
+ W+A + RL T + SW D+SCV C ET HLFF CP + +W +L K+
Sbjct: 382 LAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLS 441
Query: 294 QRVSAADWEGELQWCINHFGG--ISIAARVGLMLLNAYVYHIWKERNNRVFRSNVMSPEL 351
Q + WE L+ N G + R L ++ +WKERN R +
Sbjct: 442 QHFTNR-WEAILKLLTNKSLGHEVPFLTRYTFQLT---LHSLWKERNGRRHGEVPQAAAQ 497
Query: 352 IIHTICDEVRIKLNTVTKRFEDTEEN 377
++ + +VR +++++ + ED N
Sbjct: 498 MVRFLDKQVRNRISSIQSQ-EDRRYN 522
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 152 bits (384), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 144/287 (50%), Gaps = 11/287 (3%)
Query: 1 MNDINSIFSKFFWSGADMGCKRAPIGWESLCYPTDEGGLGFRNIEVLFEASNLRHIWDLV 60
+ +I+SI S F WSG ++ K+A + W +C P DEGGLG R+++ + S L+ IW ++
Sbjct: 146 IKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRML 205
Query: 61 SGKKTLWADWVRNNLIKDQYFWTLSASSR-SSWCWRRILASRPMALRLICTSLGDGHDTK 119
S +LW W+R L++ FW++S ++ SW W++IL R +A + + +G +T
Sbjct: 206 SST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTS 264
Query: 120 FWTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIGLSGWVFPIHVAAM-LGNIEVEAR 178
FW D W G L D D + L A V++ + H + + ++ E R
Sbjct: 265 FWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVR 324
Query: 179 EVVVDSTLRDEVIWTPSQNGE-----FTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCF 233
+ S D V W NG+ F KET+ A R +++W VW PK+
Sbjct: 325 HQGLTSG-EDTVRWKG--NGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSV 381
Query: 234 ITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVT 280
+ W+A + RL T + SW D+SCV C ET HLFF CP +
Sbjct: 382 LAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 428
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 123 bits (309), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 127/281 (45%), Gaps = 11/281 (3%)
Query: 97 ILASRPMALRLICTSLGDGHDTKFWTDVWHPRGLLFDAFEETHRYDSYLHLDARVSQFIG 156
+L RP+A + + +LG+G FW D W G L + + L+ARV + +G
Sbjct: 2 LLFLRPLAEQFVKCNLGNGRIAHFWHDSWTSLGPLIKVMGDYGSRSLRIPLNARVVEALG 61
Query: 157 LSGWVFPIHVAAMLGNIEVEAREVVVDS--TLRDEVIWTPSQ--NGEFTLKETYEAIRPR 212
++GW P+ +A I + S T+ D W F+ T++AIRPR
Sbjct: 62 VNGWKLPLSRSAPAQAIHDHISTITTPSPATIEDSFDWVVGGVVCQGFSSARTWDAIRPR 121
Query: 213 GTRLSWISLVWSPGGIPKHCFITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFH 272
L W VW G +PKH F W++ RL TR LASWG C C + E+ H
Sbjct: 122 APELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDH 181
Query: 273 LFFGCPVTKIIWESLLLKMGYQRVSAADWEGELQWC-INHFGGISIAARVGLMLLNAYVY 331
L F C +W ++ ++ W L W + S+ +V +A +Y
Sbjct: 182 LLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWMRSSSSSAPSLLRKVS---AHAIIY 238
Query: 332 HIWKERNNRVFRSNVMSPELIIHTICDEVRIKLNTVTKRFE 372
+IW++RNN + + ++P +I + E+R N ++ R+
Sbjct: 239 NIWRQRNNVLHNNLRIAPIIIFKIVDREIR---NIISSRYH 276