BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0810.1
(322 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G07760.1 | Zinc knuckle (CCHC-type) family protein | Chr2:358... 62 3e-10
AT5G32613.1 | Zinc knuckle (CCHC-type) family protein | Chr5:122... 47 2e-05
>AT2G07760.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:3584420-3586278 REVERSE LENGTH=530 | 201606
Length = 530
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%)
Query: 89 LWTRRGLARIASNIGTPLMLDGPTESKTRMSFARVLVEVGKECMFPRIIPLMVHGVRRIE 148
L++ G++ IAS +G P+ P + MS A +LVEV FP I +
Sbjct: 252 LYSILGISHIASGLGAPMATYKPRLDPSLMSEANILVEVELSKAFPPRIAAVDKKGNISM 311
Query: 149 VKVEYAWKPLKCSNCGYFGHSVGRC 173
V VEYAW P KC CG GH RC
Sbjct: 312 VNVEYAWIPAKCGKCGQLGHKASRC 336
>AT5G32613.1 | Zinc knuckle (CCHC-type) family protein |
Chr5:12263255-12265041 FORWARD LENGTH=457 | 201606
Length = 457
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 89 LWTRRGLARIASNIGTPLMLDGPTESKTRM---SFARVLVEVGKECMFPRIIPLMVHGVR 145
L++ G++ IAS IG PL + K+R+ + R V+V P ++V V+
Sbjct: 244 LYSLEGISVIASGIGEPLHTE-----KSRLGPVNIGRTKVKVVTNLGTPLPDSIVVRDVQ 298
Query: 146 --RIEVKVEYAWKPLKCSNCGYFGHSVGRC------RLSVRQNAPKSGQKEEQ 190
V V Y P KC NCG +GH + RC +L +++ P SG KE Q
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRCSKPLMKKLPFKKDLP-SGSKEVQ 350