BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0840.1
(319 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 71 1e-13
AT4G05095.1 | non-LTR retrolelement reverse transcriptase | Chr4... 60 6e-11
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 62 1e-10
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 61 3e-10
AT1G43730.1 | RNA-directed DNA polymerase (reverse transcriptase... 60 7e-10
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 119/287 (41%), Gaps = 20/287 (6%)
Query: 2 KLRTWGLQIDAFCPLCHSAEETDEHLFFQCPYSISIWPDVLLLLGLSGNHTGVWSEEVTW 61
+LR+ + D C C EET H+ F CPY+ S+W +++G + + +
Sbjct: 63 RLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNR 122
Query: 62 CVQAFKENSVLSQLGCMAFTAYFYHVWVERNNRVFRGESRTQQYVLRLMVSEIKIKVLSW 121
+Q K + S + F + +W RN +F+ + ++ Y R + +
Sbjct: 123 LIQLSKTQTTNSLDRFLPFWI-MWRLWKSRNVFLFQQKCQSPDYEARKGIQDA------- 174
Query: 122 RKKPTSSREAQLLLERWNLNI---PLSLKAPRTCKWHRPDEGVTLINTDGAFDDS--YGG 176
T A E N+++ P+ + +W+ P EG N D + Y
Sbjct: 175 ----TEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTR 230
Query: 177 FGAVLRDDQADLVIAAASMVPSESVIKH-ELQGVLMGLRLAIKFNKQRIKIATDSSQTVS 235
G +R+ +V+ + + S + H E G L L++ + + +DS V+
Sbjct: 231 SGWTIRECNGHIVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVT 290
Query: 236 ILTQTKGNSPWQVTRLVREIRSLWTRFEECSIIHVFREINQAADFLS 282
++ + +S + L+ +IR + CS+ V RE N AAD L+
Sbjct: 291 LINNGEDHS--LLGTLIYDIRHWMLKLPYCSLEFVNRERNSAADALA 335
>AT4G05095.1 | non-LTR retrolelement reverse transcriptase |
Chr4:2613798-2614214 REVERSE LENGTH=138 | 201606
Length = 138
Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 3 LRTWGLQIDAFCPLCHSAEETDEHLFFQCPYSISIWPDVLLLLGLSGNHTGVWSEEVTWC 62
+R WGL I + C LC E EHLFF C S ++W + + L+ ++ + +TW
Sbjct: 1 MRRWGLSIPSDCVLCSGNAEFREHLFFGCGVSFAVWGNFMFRASLTP--PLLFMDCLTWV 58
Query: 63 VQAFKENSVLSQLGCMAFTAYFYHVWVERNNRVFRGESRTQQYVLRLMVSEIKIKVLSWR 122
+ ++ ++ S + + F A Y +W ERN R+ SR+ +++ EIK+ +L+ +
Sbjct: 59 LSPSRDPNI-SLIIKLVFQASIYFLWKERNRRLHDHASRSSTAIIK----EIKV-ILTAK 112
Query: 123 KKPTSSRE 130
P S R
Sbjct: 113 LDPLSRRS 120
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 24/278 (8%)
Query: 11 DAFCPLCHSAEETDEHLFFQCPYSISIWPDVLLLLGLSGNHTGVWSEEVTWCVQAFKENS 70
+A C C + ET HL F+C ++ +W + G T + W + E
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNLEVEIP 68
Query: 71 VLSQLGCMAFTAYFYHVWVERNNRVFRGESRTQQYVLRLMVSEIKIKVLSWR-KKPTSSR 129
L ++G + + +W RN +F+G+ VLR + + + W ++ +
Sbjct: 69 KLGKIGNLV-PWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFE----EWSTRRELEGK 123
Query: 130 EAQLLLERWNLNIPLSLKAPRTCKWHRPDEGVTLINTDGAF--DDSYGGFGAVLRDDQAD 187
+ +ER NL++ +W P NTD + ++ G G +LR++
Sbjct: 124 ASGPQVER-NLSV----------QWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGG 172
Query: 188 LVIAAASMVP-SESVIKHELQGVLMGLRLAIKFNKQRIKIATDSSQTVSILTQTKGNSPW 246
++ A +P +++V++ EL+ + + +FN +RI +D+ V++L + W
Sbjct: 173 VLWMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLN---SDDFW 229
Query: 247 QVTR-LVREIRSLWTRFEECSIIHVFREINQAADFLSK 283
+ + +I+ L FEE R N+ AD +++
Sbjct: 230 PTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVADRIAR 267
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 14 CPLCHSAEETDEHLFFQCPYSISIWPDVLLLLGLSGNHTGVWSEEVTWCVQAFKENSVLS 73
C C +ET +HLFF C Y+ +W +G+ +E+ + L
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVW-----------RASGIPHQELRTTGITMETKMELL 104
Query: 74 QLGCMAFTA---------YFYHVWVERNNRVFRGESRTQQYVLRLMVSEIK------IKV 118
C+A + +W RN VF+ +S + Q L+ ++++ V
Sbjct: 105 LSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYV 164
Query: 119 LSWRKKPTSSREAQLLLERWNLNIPLSLKAPRTCKWHRPDEGVTLINTDGAFDDSY--GG 176
S ++ SSR Q + R KW RP N DGAF+
Sbjct: 165 QSLNQQVHSSRHQQPTMAR--------------TKWQRPPSTWIKYNYDGAFNHQTRNAK 210
Query: 177 FGAVLRDDQADLVIAAASMVPSES-VIKHELQGVLMGLRLAIKFNKQRIKIATDSSQTVS 235
G ++RD+ + + ++ + S ++ E Q +++ ++ A +++ DS Q
Sbjct: 211 AGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQGYRKVIFEGDSKQVEE 270
Query: 236 ILTQTK---GNSPWQVTRLVREIRSLWTRFEECSIIHVFREINQAADFLSK--LRPQTGY 290
++ K G W +RE R RFEE V R NQ AD L+K L+P +
Sbjct: 271 LMNNEKLNFGRFNW-----IREGRFWQKRFEEAVFKWVPRTNNQPADILAKHHLQPNQSF 325
>AT1G43730.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:16508723-16509784 REVERSE LENGTH=320 | 201606
Length = 320
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 13/122 (10%)
Query: 2 KLRTWGLQIDAFCPLCHSAEETDEHLFFQCPYSISIWPDVLLLLGLSGNHTGVWSEEVTW 61
+LR+WGL I A C LC+S +E+ HLFF+CP+ ++W +G ++ +
Sbjct: 181 RLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVW------RFFTGRANLFPPAQLMY 234
Query: 62 CV-----QAFKENSVLSQLGCMAFTAYFYHVWVERNNRVFRGESRTQQYVLRLMVSEIKI 116
C+ + +N+ L + +AF AY Y +W ERN + G +R VL+ + I+
Sbjct: 235 CLIWLLNPSRDKNTTL--IIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRA 292
Query: 117 KV 118
++
Sbjct: 293 RL 294