BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0860.1
(229 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 92 1e-22
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 92 7e-22
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 90 9e-22
AT1G43730.1 | RNA-directed DNA polymerase (reverse transcriptase... 91 2e-21
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 92 4e-21
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 92.0 bits (227), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Query: 49 EVPIEDSMEDLRVWKANEK--GEFTLKSTYEGLRRFGPTFSWHRLVWFSHNIPRHSFISW 106
++P D+ W +K F+ T+ LR SW + VWF P+H+F W
Sbjct: 7 DLPTLSGELDVYDWVVEDKLCNGFSSAKTWAALRPRSDVVSWAKTVWFKGATPKHAFHMW 66
Query: 107 VALRGGLKTKCKLLFWGIEVDPLCELCGSASEDEFHLFFQCPFSSFIWHKLLHMLGIVKV 166
V L TK +L WG+++ C LC ED HLF C F+ F+WH + L +
Sbjct: 67 VTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSVRLELPAF 126
Query: 167 SSHDWEREVDWIAKMFKGKDGIDLLGRLAFNGYLYHIWWERNKRLHNVAAIV 218
S W +DW + + + L +L LY IW +RN LHN I+
Sbjct: 127 SFVVWNDLMDWTLQ--RNRRSPPTLRKLIVQSVLYAIWKQRNNFLHNHETIL 176
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 92.4 bits (228), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 57 EDLRVWKAN---EKGEFTLKSTYEGLRRFGPTFSWHRLVWFSHNIPRHSFISWVALRGGL 113
+D +WK + F+ T+ L T WH+ VWF +++P+H+FI WV L
Sbjct: 95 DDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRL 154
Query: 114 KTKCKLLFWGIEVDPLCELCGSASEDEFHLFFQCPFSSFIWHKLLHMLGIVKVSSHDWER 173
T+ +L WG+ + C LC + + HLFF+C FS +W + +
Sbjct: 155 HTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPA--QLMD 212
Query: 174 EVDWIAKMFKGKDGIDLLGRLAFNGYLYHIWWERNKRLHN 213
++W+ + K+ I L+ RLAF+ +Y IW ERN+RLH+
Sbjct: 213 CLNWLLSPSREKN-ICLIIRLAFHSCVYAIWRERNQRLHS 251
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 89.7 bits (221), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 23/176 (13%)
Query: 42 PIVERIEEVPIEDSMEDLRVWKANEKGEFTLKSTYEGLRRFGPTFSWHRLVWFSHNIPRH 101
PI+ER +E+ +E + +T+ L G W + +WF IP+H
Sbjct: 15 PILERNKEIDLEAT------------------ATWLHLNPIGERVDWFKAIWFKGKIPKH 56
Query: 102 SFISWVALRGGLKTKCKLLFWGIEVDPLCELCGSASEDEFHLFFQCPFSSFIWHKLLHML 161
+FI+WV +R L TK +++ WG PLC C + E HLFF C F+ +W ++
Sbjct: 57 AFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVW---IYFT 113
Query: 162 GIVKV-SSHDWEREVDWIAKMFKGKDGIDLLGRLAFNGYLYHIWWERNKRLHNVAA 216
V V +E + W+ + K+ +L RL+ + +Y IW ERN RLH+ A+
Sbjct: 114 SRVHVFPPLLFEDGIRWLKNPCQDKNVTTIL-RLSHHASVYTIWKERNARLHDSAS 168
>AT1G43730.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:16508723-16509784 REVERSE LENGTH=320 | 201606
Length = 320
Score = 90.5 bits (223), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 40 LGPIVERIEEVPIED------SMEDLRVWKANEKGEFTLKSTYEGLRRFGPT---FSWHR 90
+GP+ + +PI+ +D +WK + + ST + P W++
Sbjct: 94 VGPLGPQTVGLPIDAVGLIDCQHDDSFIWKTDLHAPSNIFSTAKTSLALHPQNHIVPWYK 153
Query: 91 LVWFSHNIPRHSFISWVALRGGLKTKCKLLFWGIEVDPLCELCGSASEDEFHLFFQCPFS 150
VWF +++P+H+FI WV L T+ +L WG+ + +C LC S E HLFF+CPF
Sbjct: 154 AVWFKNHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFC 213
Query: 151 SFIWHKLLHMLGIVKVSSHDWEREVDWIAKMFKGKDGIDLLGRLAFNGYLYHIWWERNKR 210
+W + + + + W+ + K+ L+ RLAF Y+Y IW ERN
Sbjct: 214 GAVWRFFTGRANLFPPAQLMY--CLIWLLNPSRDKN-TTLIIRLAFQAYVYAIWRERNLC 270
Query: 211 LHNVAAIV 218
LH A V
Sbjct: 271 LHTGVARV 278
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 91.7 bits (226), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 39 HLGPIVERIEEVPIE------DSMEDLRVWKANE---KGEFTLKSTYEGLRRFGPTFSWH 89
H + RIE+V E S ED WK N K F K T+ R +W+
Sbjct: 254 HRHDTLLRIEDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWY 313
Query: 90 RLVWFSHNIPRHSFISWVALRGGLKTKCKLLFWGIEVDPLCELCGSASEDEFHLFFQCPF 149
+ VWFSH P++S ++W+A++ L T ++L W D C LC E HLFF CP+
Sbjct: 314 KGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPY 373
Query: 150 SSFIWHKLLHMLGIVKVSSHDWEREVDWIAKMFKGKDGIDLLGRLAFNGYLYHIWWERNK 209
S+ +W L L + + ++ WE + + G + + L R F L+ +W ERN
Sbjct: 374 SAEVWSTLTRKL-LSQHFTNRWEAILKLLTNKSLGHE-VPFLTRYTFQLTLHSLWKERNG 431
Query: 210 RLH 212
R H
Sbjct: 432 RRH 434