BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0880.1
(435 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 115 4e-29
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 112 2e-27
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 106 1e-24
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 106 2e-24
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 106 2e-24
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 115 bits (289), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 22/277 (7%)
Query: 8 IGNGNDTWFWKDPWHPMGILLPFFSEKLKYDSVLHLNAKMSDCMVDSNWTLS-------- 59
+GNG FW D W G LL F + +A++ + + +W L
Sbjct: 16 MGNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQ 75
Query: 60 -YLQFIYLGPIASNLHKVGVAEGYEDSRIANDKGV----FTLKSTYEALREVSPSVSWSS 114
+L + + P+ + G + N G F+ + T+E +R SP+V W+
Sbjct: 76 LFLAALTMAPVPHE------SRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAK 129
Query: 115 LVWFSHNIPRHSFITWVVLHKAVKTKLKLYKWGLNIDVTCSLCSKEDEDDTHLFFTCSYS 174
+VWF IPR S ITW+ + + T+ +L WG+NI + LCS DE HLFF CS+S
Sbjct: 130 VVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFS 189
Query: 175 KGIWRKLLKMLVLIQVPCNSWDSMIDWCARMFSGRDKIAILGKLTFNAFIYHIWYERNRR 234
IW P + W ++ IL KL + +YH+W ERN R
Sbjct: 190 LAIWEFFASKFR--PSPPFGLPAASSWILQLPLRSHSTTIL-KLLLQSAVYHVWKERNAR 246
Query: 235 VFSSTCVPQEGLQGRIMEEVRIQMTCLSCSTVSSPRL 271
+F+S L+ I +R ++ + + SP L
Sbjct: 247 IFTSISSSASSLRLAIDRTMRNRLLSFPSADLRSPSL 283
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 112 bits (280), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 131/287 (45%), Gaps = 14/287 (4%)
Query: 8 IGNGNDTWFWKDPWHPMGILLPFFSEKLKYDSVLHLNAKMSDCMVDSNWTLS-------- 59
+G+G FW D W +G L+ L ++A + D + ++W ++
Sbjct: 16 VGSGVTAKFWHDNWIGLGPLIEVIGPLGPRTVGLPIDAVVRDALRGTSWWIASSRSRNPI 75
Query: 60 YLQFIYLGPIASNLHKVGVAEGYE-DSRIANDKGVFTLKSTYEALREVSPSVSWSSLVWF 118
+Q L P A L + + + + F+ T+ AL S +V W VWF
Sbjct: 76 IVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWF 135
Query: 119 SHNIPRHSFITWVVLHKAVKTKLKLYKWGLNIDVTCSLCSKEDEDDTHLFFTCSYSKGIW 178
+++P+H+FI WVV + T+ +L WGL+I C LC+ D+ HLFF C +S +W
Sbjct: 136 KNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVW 195
Query: 179 RKLLKMLVLIQVPCNSWDSMIDWCARMFSGRDK-IAILGKLTFNAFIYHIWYERNRRVFS 237
R + P D + +W + R+K I ++ +L F++ +Y IW ERN+R+ S
Sbjct: 196 R-FFTASTNLNPPAQLMDCL-NWL--LSPSREKNICLIIRLAFHSCVYAIWRERNQRLHS 251
Query: 238 STCVPQEGLQGRIMEEVRIQMTCLSCSTVSSPRLDEIAGHWNLYMTV 284
E + I +R ++ LS ST P + G +TV
Sbjct: 252 GVSRSTESILKDIQLIIRARLDPLSRSTAHQPNALSLLGTCEPEITV 298
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 9/245 (3%)
Query: 8 IGNGNDTWFWKDPWHPMGILLPFFSEKLKYDSVLHLNAKMSDCMVDSN-WTLSYLQFIYL 66
I NG++T FW D W +G L+ + D + L+A +++ +V+ + + +
Sbjct: 203 IHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI 262
Query: 67 GPIASNLHKVGVAEGYEDSRIAND----KGVFTLKSTYEALREVSPSVSWSSLVWFSHNI 122
+ + + G+ G + R + K F K T+ A RE V+W VWFSH
Sbjct: 263 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 322
Query: 123 PRHSFITWVVLHKAVKTKLKLYKWGLNIDVTCSLCSKEDEDDTHLFFTCSYSKGIWRKLL 182
P++S + W+ + + T ++ W D +C LC E HLFFTC YS +W L
Sbjct: 323 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLT 382
Query: 183 KMLVLIQVPCNSWDSMIDWCARMFSGRDKIAILGKLTFNAFIYHIWYERNRRVFSSTCVP 242
+ L L Q N W++++ G + + L + TF ++ +W ERN R VP
Sbjct: 383 RKL-LSQHFTNRWEAILKLLTNKSLGHE-VPFLTRYTFQLTLHSLWKERNGRRHGE--VP 438
Query: 243 QEGLQ 247
Q Q
Sbjct: 439 QAAAQ 443
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 9/245 (3%)
Query: 8 IGNGNDTWFWKDPWHPMGILLPFFSEKLKYDSVLHLNAKMSDCMVDSN-WTLSYLQFIYL 66
I NG++T FW D W +G L+ + D + L+A +++ +V+ + + +
Sbjct: 257 IHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI 316
Query: 67 GPIASNLHKVGVAEGYEDSRIAND----KGVFTLKSTYEALREVSPSVSWSSLVWFSHNI 122
+ + + G+ G + R + K F K T+ A RE V+W VWFSH
Sbjct: 317 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 376
Query: 123 PRHSFITWVVLHKAVKTKLKLYKWGLNIDVTCSLCSKEDEDDTHLFFTCSYSKGIWRKLL 182
P++S + W+ + + T ++ W D +C LC E HLFFTC YS +W L
Sbjct: 377 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLT 436
Query: 183 KMLVLIQVPCNSWDSMIDWCARMFSGRDKIAILGKLTFNAFIYHIWYERNRRVFSSTCVP 242
+ L L Q N W++++ G + + L + TF ++ +W ERN R VP
Sbjct: 437 RKL-LSQHFTNRWEAILKLLTNKSLGHE-VPFLTRYTFQLTLHSLWKERNGRRHGE--VP 492
Query: 243 QEGLQ 247
Q Q
Sbjct: 493 QAAAQ 497
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 106 bits (264), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 9/245 (3%)
Query: 8 IGNGNDTWFWKDPWHPMGILLPFFSEKLKYDSVLHLNAKMSDCMVDSN-WTLSYLQFIYL 66
I NG++T FW D W +G L+ + D + L+A +++ +V+ + + +
Sbjct: 257 IHNGSNTSFWFDNWSKIGRLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI 316
Query: 67 GPIASNLHKVGVAEGYEDSRIAND----KGVFTLKSTYEALREVSPSVSWSSLVWFSHNI 122
+ + + G+ G + R + K F K T+ A RE V+W VWFSH
Sbjct: 317 EDVIAEVRHQGLTSGEDTVRWKGNGDIFKPCFNTKETWAATREPKLKVNWYKGVWFSHAT 376
Query: 123 PRHSFITWVVLHKAVKTKLKLYKWGLNIDVTCSLCSKEDEDDTHLFFTCSYSKGIWRKLL 182
P++S + W+ + + T ++ W D +C LC E HLFFTC YS +W L
Sbjct: 377 PKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLT 436
Query: 183 KMLVLIQVPCNSWDSMIDWCARMFSGRDKIAILGKLTFNAFIYHIWYERNRRVFSSTCVP 242
+ L L Q N W++++ G + + L + TF ++ +W ERN R VP
Sbjct: 437 RKL-LSQHFTNRWEAILKLLTNKSLGHE-VPFLTRYTFQLTLHSLWKERNGRRHGE--VP 492
Query: 243 QEGLQ 247
Q Q
Sbjct: 493 QAAAQ 497