BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0930.1
(384 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 213 1e-63
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 213 1e-63
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 214 2e-62
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 172 1e-48
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 147 1e-38
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 213 bits (541), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 163/262 (62%), Gaps = 2/262 (0%)
Query: 123 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 182
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKINGRIQSWKSRFLSFAGRVLLIKVV 242
F +G+LP+RYLGLPL++ ++T S PL++KI RI W +R LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNCMLLYWAAVFVIPKRVMNDINSIFSKFLWSGADMGCKRAPIGWESLCYPTDEGGLGFR 302
++ + +W + F +P + +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 NIEVLFEASNLRHIWDLVSGKKTLWADWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 361
+++ + S L+ IW ++S +LW W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 PMALRLICTSLGDGHDTKFWTD 383
+A + + +G +T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 213 bits (541), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 163/262 (62%), Gaps = 2/262 (0%)
Query: 123 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 182
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKINGRIQSWKSRFLSFAGRVLLIKVV 242
F +G+LP+RYLGLPL++ ++T S PL++KI RI W +R LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNCMLLYWAAVFVIPKRVMNDINSIFSKFLWSGADMGCKRAPIGWESLCYPTDEGGLGFR 302
++ + +W + F +P + +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 NIEVLFEASNLRHIWDLVSGKKTLWADWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 361
+++ + S L+ IW ++S +LW W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 PMALRLICTSLGDGHDTKFWTD 383
+A + + +G +T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 214 bits (546), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 163/262 (62%), Gaps = 2/262 (0%)
Query: 123 VTHLCFADDLMVFFRGDMGSAQSLKGVLTGFHRATGLQANVLKSTIFFAGLSAQGQSDIT 182
+THLCFADDL+VF G S + + + F +GLQ ++ KSTI+ AG+ ++DI
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKADIL 67
Query: 183 TILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKINGRIQSWKSRFLSFAGRVLLIKVV 242
F +G+LP+RYLGLPL++ ++T S PL++KI RI W +R LSFAGR+ LI V
Sbjct: 68 HSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSV 127
Query: 243 LNCMLLYWAAVFVIPKRVMNDINSIFSKFLWSGADMGCKRAPIGWESLCYPTDEGGLGFR 302
++ + +W + F +P + +I+SI S FLWSG ++ K+A + W +C P DEGGLG R
Sbjct: 128 IHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIR 187
Query: 303 NIEVLFEASNLRHIWDLVSGKKTLWADWVRNNLIKDQHFWTLSASSR-SSWCWRRILASR 361
+++ + S L+ IW ++S +LW W+R L++ FW++S ++ SW W++IL R
Sbjct: 188 SLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILKHR 246
Query: 362 PMALRLICTSLGDGHDTKFWTD 383
+A + + +G +T FW D
Sbjct: 247 ALASGFVKHDIHNGSNTSFWFD 268
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 172 bits (435), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 133/215 (61%), Gaps = 2/215 (0%)
Query: 170 FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKINGRIQSWKSRF 229
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 230 LSFAGRVLLIKVVLNCMLLYWAAVFVIPKRVMNDINSIFSKFLWSGADMGCKRAPIGWES 289
LSFAGR+ LI V++ + +W + F +P + +I+SI S FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 290 LCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSGKKTLWADWVRNNLIKDQHFWTLSASSR 349
+C P DEGGLG R+++ + S L+ IW ++S +LW W+R L++ FW++S ++
Sbjct: 121 VCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTT 179
Query: 350 -SSWCWRRILASRPMALRLICTSLGDGHDTKFWTD 383
SW W++IL R +A + + +G +T FW D
Sbjct: 180 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFD 214
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 147 bits (371), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 30/215 (13%)
Query: 170 FAGLSAQGQSDITTILEFGTGSLPIRYLGLPLISSRLTYSHCIPLIDKINGRIQSWKSRF 229
AG+ ++DI F +G+LP+RYLGLPL++ ++T S PL++KI RI W +R
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 230 LSFAGRVLLIKVVLNCMLLYWAAVFVIPKRVMNDINSIFSKFLWSGADMGCKRAPIGWES 289
LSFAGR+ LI V++ + +W + F +P + +I+SI S FLWSG ++ K+A + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSD 120
Query: 290 LCYPTDEGGLGFRNIEVLFEASNLRHIWDLVSGKKTLWADWVRNNLIKDQHFWTLSASSR 349
+C P DEGGLG R+++ + S FW++S ++
Sbjct: 121 VCTPKDEGGLGIRSLKEANKGS-----------------------------FWSISGNTT 151
Query: 350 -SSWCWRRILASRPMALRLICTSLGDGHDTKFWTD 383
SW W++IL R +A + + +G +T FW D
Sbjct: 152 LGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFD 186