BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0940.1
(417 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G33710.1 | RNA-directed DNA polymerase (reverse transcriptase... 99 5e-24
AT5G18880.1 | RNA-directed DNA polymerase (reverse transcriptase... 95 1e-21
AT2G02520.1 | RNA-directed DNA polymerase (reverse transcriptase... 91 4e-21
AT1G60720.1 | RNA-directed DNA polymerase (reverse transcriptase... 91 2e-20
AT4G04650.1 | RNA-directed DNA polymerase (reverse transcriptase... 90 8e-20
>AT1G33710.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:12219657-12220289 FORWARD LENGTH=210 | 201606
Length = 210
Score = 99.4 bits (246), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 6/199 (3%)
Query: 20 LGNIEVEAREVVVDSTLRDEVIWTPSQNGEFTLKETYEAIRPRGTRLSWISLVWSPGGIP 79
+G+ ++ + + + D V+ NG F+ +T+ A+RPR +SW VW G P
Sbjct: 1 MGSFSIDLPTLSGELDVYDWVVEDKLCNG-FSSAKTWAALRPRSDVVSWAKTVWFKGATP 59
Query: 80 KHCFITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLL 139
KH F W+ RL T++ LASWGM + T+C C D E HLF C +W ++ +
Sbjct: 60 KHAFHMWVTNLDRLPTKTRLASWGMQLQTTCGLCSLDIEDRDHLFLTCEFACFLWHTVSV 119
Query: 140 KMGYQRVSAADWEGELQWCINHFGGLSIAARVGRMLLNAYVYHIWKEQNNRVFRSNVMSP 199
++ S W + W + R ++++ + +Y IWK++NN + + P
Sbjct: 120 RLELPAFSFVVWNDLMDWTLQRNRRSPPTLR--KLIVQSVLYAIWKQRNNFLHNHETILP 177
Query: 200 ELIIHTICDEVRIKLNTVT 218
++ TI E++ N++T
Sbjct: 178 SVVFKTIDREIK---NSIT 193
>AT5G18880.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr5:6300535-6301422 REVERSE LENGTH=295 | 201606
Length = 295
Score = 95.1 bits (235), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 11/148 (7%)
Query: 49 EFTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCFITWLAFRQRLKTRSLLASWGMAIDT 108
F+ ++T+E IR + W +VW IP+ ITW++F +RL TR L WGM I +
Sbjct: 108 SFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPS 167
Query: 109 SCVFCGGDEETVFHLFFGCPVTKIIWESLLLKM----GYQRVSAADWEGELQWCINHFGG 164
S V C +ET HLFF C + IWE K + +A+ W I
Sbjct: 168 SWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGLPAASSW-------ILQLPL 220
Query: 165 LSIAARVGRMLLNAYVYHIWKEQNNRVF 192
S + + ++LL + VYH+WKE+N R+F
Sbjct: 221 RSHSTTILKLLLQSAVYHVWKERNARIF 248
>AT2G02520.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr2:676771-678145 REVERSE LENGTH=211 | 201606
Length = 211
Score = 91.3 bits (225), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 5/176 (2%)
Query: 46 QNGEFTLKET--YEAIRPRGTRLSWISLVWSPGGIPKHCFITWLAFRQRLKTRSLLASWG 103
+N E L+ T + + P G R+ W +W G IPKH FI W+ R RL T+ + SWG
Sbjct: 19 RNKEIDLEATATWLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWG 78
Query: 104 MAIDTSCVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGYQRVSAADWEGELQWCINHFG 163
C+FC +ET HLFF C + +W + +E ++W N
Sbjct: 79 FIFPPLCLFCNTHDETRQHLFFDCEFAREVW--IYFTSRVHVFPPLLFEDGIRWLKNPCQ 136
Query: 164 GLSIAARVGRMLLNAYVYHIWKEQNNRVFRSNVMSPELIIHTICDEVRIKLNTVTK 219
++ + R+ +A VY IWKE+N R+ S +I I +R L+ +++
Sbjct: 137 DKNVTT-ILRLSHHASVYTIWKERNARLHDSASRPAAALILEIKSVIRCHLDPLSR 191
>AT1G60720.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr1:22357072-22357941 FORWARD LENGTH=289 | 201606
Length = 289
Score = 91.3 bits (225), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 50 FTLKETYEAIRPRGTRLSWISLVWSPGGIPKHCFITWLAFRQRLKTRSLLASWGMAIDTS 109
F+ T++AIRPR L W VW G +PKH F W++ RL TR LASWG
Sbjct: 109 FSSARTWDAIRPRAPELDWAKAVWFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFD 168
Query: 110 CVFCGGDEETVFHLFFGCPVTKIIWESLLLKMGYQRVSAADWEGELQWCINHFGGLSIAA 169
C C + E+ HL F C +W ++ ++ W L W S +
Sbjct: 169 CCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLSWM--RSSSSSAPS 226
Query: 170 RVGRMLLNAYVYHIWKEQNNRVFRSNVMSPELIIHTICD-EVRIKLNTVTKRFE 222
+ ++ +A +Y+IW+++NN V +N+ +II I D E+R N ++ R+
Sbjct: 227 LLRKVSAHAIIYNIWRQRNN-VLHNNLRIAPIIIFKIVDREIR---NIISSRYH 276
>AT4G04650.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr4:2353989-2355213 REVERSE LENGTH=332 | 201606
Length = 332
Score = 90.1 bits (222), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 13/210 (6%)
Query: 16 VAAMLGNIEVEAREVVVDSTLRDEVIWTP---SQNGEFTLKETYEAIRPRGTRLSWISLV 72
+ L N+ EA+ ++ D D +W + + F+ T+ A+ P+ + W V
Sbjct: 75 IIVQLKNLLPEAQGLL-DCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAV 133
Query: 73 WSPGGIPKHCFITWLAFRQRLKTRSLLASWGMAIDTSCVFCGGDEETVFHLFFGCPVTKI 132
W +PKH FI W+ RL TR L +WG++I C+ C +++ HLFF C + +
Sbjct: 134 WFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGV 193
Query: 133 IWESLLLKMGYQRVSAADWEGELQWCINHFGGLSIAARVG---RMLLNAYVYHIWKEQNN 189
+W +L C+N S + R+ ++ VY IW+E+N
Sbjct: 194 VWRFFTASTNLNP------PAQLMDCLNWLLSPSREKNICLIIRLAFHSCVYAIWRERNQ 247
Query: 190 RVFRSNVMSPELIIHTICDEVRIKLNTVTK 219
R+ S E I+ I +R +L+ +++
Sbjct: 248 RLHSGVSRSTESILKDIQLIIRARLDPLSR 277