BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000106.1_g0950.1
(138 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00480.1 | ATP synthase subunit beta | ChrC:52660-54156 REVER... 256 1e-84
AT5G08680.1 | ATP synthase alpha/beta family protein | Chr5:2821... 142 2e-40
AT5G08670.1 | ATP synthase alpha/beta family protein | Chr5:2818... 142 2e-40
AT5G08690.1 | ATP synthase alpha/beta family protein | Chr5:2825... 142 2e-40
ATMG01190.1 | ATP synthase subunit 1 | ChrM:302166-303689 REVERS... 54 6e-09
>ATCG00480.1 | ATP synthase subunit beta | ChrC:52660-54156 REVERSE
LENGTH=498 | 201606
Length = 498
Score = 256 bits (654), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 123/138 (89%), Positives = 131/138 (94%)
Query: 1 MPNIYNALVVKGRDTVGQQIDVTCEVQQLFGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 60
MPNIYNALVVKGRDT+GQ+I+VTCEVQQL GNNRVRAVAMSAT+GL RGM+V+D G PLS
Sbjct: 40 MPNIYNALVVKGRDTLGQEINVTCEVQQLLGNNRVRAVAMSATEGLKRGMDVVDMGNPLS 99
Query: 61 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLL 120
VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIH+SAPAFI+LDTKLSIFETGIKVVDLL
Sbjct: 100 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHKSAPAFIELDTKLSIFETGIKVVDLL 159
Query: 121 APYRRGGKIGLFGGGWSG 138
APYRRGGKIGLFGG G
Sbjct: 160 APYRRGGKIGLFGGAGVG 177
>AT5G08680.1 | ATP synthase alpha/beta family protein |
Chr5:2821992-2824683 FORWARD LENGTH=559 | 201606
Length = 559
Score = 142 bits (358), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 90/138 (65%), Gaps = 5/138 (3%)
Query: 1 MPNIYNALVVKGRDTVGQQIDVTCEVQQLFGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 60
+P I +L V+ T + EV G N VR +AM T+GL RG +V++TGAP++
Sbjct: 107 LPPIMTSLEVQDHPT-----RLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPIT 161
Query: 61 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLL 120
VPVG ATLGRI NVLGEP+D G + T PIHR APA + L T I TGIKVVDLL
Sbjct: 162 VPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLL 221
Query: 121 APYRRGGKIGLFGGGWSG 138
APY+RGGKIGLFGG G
Sbjct: 222 APYQRGGKIGLFGGAGVG 239
>AT5G08670.1 | ATP synthase alpha/beta family protein |
Chr5:2818395-2821149 REVERSE LENGTH=556 | 201606
Length = 556
Score = 142 bits (357), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 90/138 (65%), Gaps = 5/138 (3%)
Query: 1 MPNIYNALVVKGRDTVGQQIDVTCEVQQLFGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 60
+P I +L V+ T + EV G N VR +AM T+GL RG +V++TGAP++
Sbjct: 104 LPPIMTSLEVQDHPT-----RLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPIT 158
Query: 61 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLL 120
VPVG ATLGRI NVLGEP+D G + T PIHR APA + L T I TGIKVVDLL
Sbjct: 159 VPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLL 218
Query: 121 APYRRGGKIGLFGGGWSG 138
APY+RGGKIGLFGG G
Sbjct: 219 APYQRGGKIGLFGGAGVG 236
>AT5G08690.1 | ATP synthase alpha/beta family protein |
Chr5:2825739-2828352 FORWARD LENGTH=556 | 201606
Length = 556
Score = 142 bits (357), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/138 (54%), Positives = 90/138 (65%), Gaps = 5/138 (3%)
Query: 1 MPNIYNALVVKGRDTVGQQIDVTCEVQQLFGNNRVRAVAMSATDGLTRGMEVIDTGAPLS 60
+P I +L V+ T + EV G N VR +AM T+GL RG +V++TGAP++
Sbjct: 104 LPPIMTSLEVQDHPT-----RLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPIT 158
Query: 61 VPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLL 120
VPVG ATLGRI NVLGEP+D G + T PIHR APA + L T I TGIKVVDLL
Sbjct: 159 VPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLL 218
Query: 121 APYRRGGKIGLFGGGWSG 138
APY+RGGKIGLFGG G
Sbjct: 219 APYQRGGKIGLFGGAGVG 236
>ATMG01190.1 | ATP synthase subunit 1 | ChrM:302166-303689 REVERSE
LENGTH=507 | 201606
Length = 507
Score = 53.5 bits (127), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%)
Query: 32 NNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTS 91
N V V + G V TG+ + VP G A LGR+ + +G P+D G +
Sbjct: 70 NENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQR 129
Query: 92 PIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGGWSG 138
+ AP ++ + +TG+K VD L P RG + L GG +G
Sbjct: 130 RVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTG 176