BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0020.1
(356 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 63 2e-10
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 62 4e-10
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 62 4e-10
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 62 4e-10
AT3G24255.1 | RNA-directed DNA polymerase (reverse transcriptase... 54 2e-07
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 2 ISQPGRTVLIKSVLASFCTYLCGYQIMPKEVIYELEKIERSFWW-GHAINEKKLHFIKWK 60
+S GR LI SV+ S + +P I E++ I SF W G +N KK + W
Sbjct: 115 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWS 173
Query: 61 IITSPKNSGGLGIRSINEVNQALMTKMTWRYLT 93
+ +PK+ GGLGIRS+ E N+ + K+ WR L+
Sbjct: 174 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS 206
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 2 ISQPGRTVLIKSVLASFCTYLCGYQIMPKEVIYELEKIERSFWW-GHAINEKKLHFIKWK 60
+S GR LI SV+ S + +P I E++ I SF W G +N KK + W
Sbjct: 115 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWS 173
Query: 61 IITSPKNSGGLGIRSINEVNQALMTKMTWRYLTE 94
+ +PK+ GGLGIRS+ E N+ + K+ WR L+
Sbjct: 174 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS 207
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 2 ISQPGRTVLIKSVLASFCTYLCGYQIMPKEVIYELEKIERSFWW-GHAINEKKLHFIKWK 60
+S GR LI SV+ S + +P I E++ I SF W G +N KK + W
Sbjct: 115 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWS 173
Query: 61 IITSPKNSGGLGIRSINEVNQALMTKMTWRYLTE 94
+ +PK+ GGLGIRS+ E N+ + K+ WR L+
Sbjct: 174 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS 207
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 2 ISQPGRTVLIKSVLASFCTYLCGYQIMPKEVIYELEKIERSFWW-GHAINEKKLHFIKWK 60
+S GR LI SV+ S + +P I E++ I SF W G +N KK + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWS 119
Query: 61 IITSPKNSGGLGIRSINEVNQALMTKMTWRYLTE 94
+ +PK+ GGLGIRS+ E N+ + K+ WR L+
Sbjct: 120 DVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSS 153
>AT3G24255.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8793208 FORWARD LENGTH=746 | 201606
Length = 746
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 2 ISQPGRTVLIKSVLASFCTYLCGYQIMPKEVIYELEKIERSFWW-GHAINEKKLHFIKWK 60
+S GR LI SV+ S + +P I E++ I SF W G +N KK + W
Sbjct: 61 LSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK-VAWS 119
Query: 61 IITSPKNSGGLGIRSINEVNQA 82
+ +PK+ GGLGIRS+ E N+
Sbjct: 120 DVCTPKDEGGLGIRSLKEANKG 141