BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0060.1
(762 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 67 7e-13
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 58 9e-10
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 59 2e-08
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 59 2e-08
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 50 1e-06
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 66.6 bits (161), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 469 NRTLLDMVRSMMSLANLPNTFWGYALETAAFTLNRAPSKAVE-KTPYELWFGKIPKLSFL 527
NRT+++ VRSM+ LP TF A TA +N+ PS A+ P E+WF +P S+L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 528 KVWGCEVYVKRLQGDKLAPKSDK 550
+ +GC Y+ +G KL P++ K
Sbjct: 62 RRFGCVAYIHCDEG-KLKPRAKK 83
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 58.2 bits (139), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 274 YNGLYITNIKNEVFNIETNRLRSDDSNPSYLWHCRLGHINMTRMKKLHEHGLLGSYNLES 333
++ LYI ++ V E+N L + + LWH RL H++ M+ L + G L S + S
Sbjct: 44 HDSLYI--LQGSVETGESN-LAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSS 100
Query: 334 YDTCESCLMGKMTRSSFKGKGDRAKEPLELIHTDVCGPMSTP 375
CE C+ GK R +F K PL+ +H+D+ G S P
Sbjct: 101 LKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 665 QRLQELSQKTDILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDG 724
+++ L + + + EPSTYN+A + W AM E+ +M W + LP
Sbjct: 67 EKVSPLYHSFLVCIAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPN 123
Query: 725 AKPIGCKWVFKVK 737
KPIGCKWV+K+K
Sbjct: 124 KKPIGCKWVYKIK 136
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 665 QRLQELSQKTDILLLEDNEPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDG 724
+++ L + + + EPSTYN+A + W AM E+ +M W + LP
Sbjct: 67 EKVSPLYHSFLVCIAKAKEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPN 123
Query: 725 AKPIGCKWVFKVK 737
KPIGCKWV+K+K
Sbjct: 124 KKPIGCKWVYKIK 136
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 683 EPSTYNQAMTSPDSEKWLKAMRSEMDSMSENQVWNLIDLPDGAKPIGCKWVFKVK 737
EP + A+ P W +AM+ E+D++S N+ W L+ P +GCKWVFK K
Sbjct: 27 EPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTK 78