BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0080.1
(237 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 192 8e-56
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 192 8e-56
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 104 6e-28
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 44 4e-05
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 192 bits (487), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 4/213 (1%)
Query: 1 MQEEYDALISNKTWVLIPSLSSLNILRCKWVYRIKYKVDGTIERYKVRLVAKGFHQMDGL 60
M +E A+ + TW + + + CKWVY+IKY DGTIERYK RLVAKG+ Q +G+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161
Query: 61 DYSETFSPVVKATTIRLVLTIVVSNHWSILQLDVSNAFLHGILEEDVFMSQPPGFT---- 116
D+ ETFSPV K T+++L+L I ++++ QLD+SNAFL+G L+E+++M PPG+
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221
Query: 117 DASSPSYVCKLQKSLYGLKQAPKAWFTRFASFLFTLDFQKSSHDHSMFVKSQGYSIIIIL 176
D+ P+ VC L+KS+YGLKQA + WF +F+ L F +S DH+ F+K + +L
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281
Query: 177 LYVDDIVLTGTHSSDLTLLIQKLESEFSMKELG 209
+YVDDI++ + + + L +L+S F +++LG
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 192 bits (487), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 140/213 (65%), Gaps = 4/213 (1%)
Query: 1 MQEEYDALISNKTWVLIPSLSSLNILRCKWVYRIKYKVDGTIERYKVRLVAKGFHQMDGL 60
M +E A+ + TW + + + CKWVY+IKY DGTIERYK RLVAKG+ Q +G+
Sbjct: 102 MDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGI 161
Query: 61 DYSETFSPVVKATTIRLVLTIVVSNHWSILQLDVSNAFLHGILEEDVFMSQPPGFT---- 116
D+ ETFSPV K T+++L+L I ++++ QLD+SNAFL+G L+E+++M PPG+
Sbjct: 162 DFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQG 221
Query: 117 DASSPSYVCKLQKSLYGLKQAPKAWFTRFASFLFTLDFQKSSHDHSMFVKSQGYSIIIIL 176
D+ P+ VC L+KS+YGLKQA + WF +F+ L F +S DH+ F+K + +L
Sbjct: 222 DSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVL 281
Query: 177 LYVDDIVLTGTHSSDLTLLIQKLESEFSMKELG 209
+YVDDI++ + + + L +L+S F +++LG
Sbjct: 282 VYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 104 bits (260), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 60/81 (74%)
Query: 1 MQEEYDALISNKTWVLIPSLSSLNILRCKWVYRIKYKVDGTIERYKVRLVAKGFHQMDGL 60
MQEE DAL NKTW+L+P + NIL CKWV++ K DGT++R K RLVAKGFHQ +G+
Sbjct: 44 MQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGI 103
Query: 61 DYSETFSPVVKATTIRLVLTI 81
+ ET+SPVV+ TIR +L +
Sbjct: 104 YFVETYSPVVRTATIRTILNV 124
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 175 ILLYVDDIVLTGTHSSDLTLLIQKLESEFSMKELGVGFYTL 215
+LLYVDDI+LTG+ ++ L +LI +L S FSMK+LG Y L
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFL 43