BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0250.1
(726 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 182 3e-49
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 124 1e-29
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 124 1e-29
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 119 1e-27
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 99 1e-21
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 182 bits (463), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/558 (27%), Positives = 252/558 (45%), Gaps = 57/558 (10%)
Query: 207 AVPRYQMQCFALPKGISDNIESIQRTYWW---GKSKTFHTINWNSICKPRNQGGLGLRLP 263
A+P Y M CF LPK + I S+ +WW ++K H W+ + + +GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 264 QLDNQAFLHKLNWRIVKNLEAIWVQVLKGKYFHNSLKPTQP-KNHHSWTWKSISKYHHNL 322
+ N A L K WR++ E++ +V K +YFH S P + S+ WKSI L
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 323 DSLIFWSINKGEHINIWTDYWIPNHP----------PPITNDRGCSFEMVSQLIMNG--T 370
+ GE I IW W+ + P PP S VS LI
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 371 WNINLINMCFNNDIGRSILSINLNPNEE---DNTIWTLTKSGNFSLKSMYNFL------R 421
W ++I M F ++ R ++ L P D+ W T SG++++KS Y L R
Sbjct: 182 WRKDVIEMLF-PEVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 422 NQTIYNNQNQMDWFF--IWNMNTIPRIKLFLWKCCTNSLPVRAKIG-KFIGNNYSCVNCN 478
+ ++ ++ + IW T P+I+ FLWKC +NSLPV + + + +C+ C
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299
Query: 479 E-EETLDNVMLHCSFAKAIWFNFNIR-------TDTINTTTQWI-------KQWKPLEED 523
+ET+++++ C+FA+ W +I D+I W+ QW E
Sbjct: 300 SCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EK 355
Query: 524 NINLYAKILWFLWKARRENCFTTNKQNPLQIIERIMNT-STTPLRTESST--IKKCKEKT 580
L +LW LWK R E F + N +++ R + +RTE+ + K ++
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS 415
Query: 581 ITQTWRPPSTPCMKINVAASFVSINEQAGIGYIIRDAEAN-NIIAVADIVRGQHAEECES 639
WRPP +K N A++ NE+ GIG+++R+ + + + + + E E
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAEL 475
Query: 640 LAILSSLKYALQLQIQYVHVESDNQAIILAFNDKGGNLHWQT-QSIIHQIKDIKDKFTGT 698
A+ ++ + Q YV ESD+Q +I N+ + W + + I ++ + +FT
Sbjct: 476 EAMRWAVLSLSRFQYNYVIFESDSQVLIEILNN---DEIWPSLKPTIQDLQRLLSQFTEV 532
Query: 699 IFTHISRNCNTYADALAK 716
F I R NT A+ +A+
Sbjct: 533 KFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 195/459 (42%), Gaps = 43/459 (9%)
Query: 82 LAIKHLLFADDCIIFGQNSLENIYNLKQILKEFSEASGQMINYAKSNIFFPKNSHPKFER 141
+ I HL FADD ++F +I + QI +F++ SG I+ KS I+ +
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 142 MIIRELKVHQSSSGDKYLGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVI 201
I+ + +YLG L + + L+ +I+ ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 202 STIAAAVPRYQMQCFALPKGISDNIESIQRTYWWGKSK---TFHTINWNSICKPRNQGGL 258
S++ ++ + M F LP I+SI ++ W + + W+ +C P+++GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 259 GLRLPQLDNQAFLHKLNWRIVKNLEAIWVQVL------KGKYFHNSLKPTQPKNHHSWTW 312
G+R + N+ L KL WR++ + ++WVQ L KG ++ S T SW W
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMW 239
Query: 313 KSISKYHHNLDSLIFWSINKGEHINIWTDYWIP-NHPPPITNDRGCSFEM-------VSQ 364
K I K+ + I+ G + + W D W +T RGC +M V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGC-IDMGITLHASVAE 298
Query: 365 LIMNGTWNINLINMCFN-NDIGRSILSINLNPNEEDNTIWTLTKSGN-------FSLKSM 416
++N + + D+ + L E+ T+ GN F+ K
Sbjct: 299 AVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKET 353
Query: 417 YNFLRNQTIYNNQNQMDWFFIWNMNTIPRIKLFLWKCCTNSLPVRAKIGKF-IGNNYSCV 475
+ R + N + WF + P+ + W N L ++ + G + SCV
Sbjct: 354 WAATREPKLKVNWYKGVWF----SHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 409
Query: 476 NCNE-EETLDNVMLHCSFAKAIWFNFNIRTDTINTTTQW 513
C+ ET D++ C ++ +W + + + T +W
Sbjct: 410 LCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRW 448
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/459 (23%), Positives = 195/459 (42%), Gaps = 43/459 (9%)
Query: 82 LAIKHLLFADDCIIFGQNSLENIYNLKQILKEFSEASGQMINYAKSNIFFPKNSHPKFER 141
+ I HL FADD ++F +I + QI +F++ SG I+ KS I+ +
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 142 MIIRELKVHQSSSGDKYLGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVI 201
I+ + +YLG L + + L+ +I+ ++ KW LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 202 STIAAAVPRYQMQCFALPKGISDNIESIQRTYWWGKSK---TFHTINWNSICKPRNQGGL 258
S++ ++ + M F LP I+SI ++ W + + W+ +C P+++GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 259 GLRLPQLDNQAFLHKLNWRIVKNLEAIWVQVL------KGKYFHNSLKPTQPKNHHSWTW 312
G+R + N+ L KL WR++ + ++WVQ L KG ++ S T SW W
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMW 239
Query: 313 KSISKYHHNLDSLIFWSINKGEHINIWTDYWIP-NHPPPITNDRGCSFEM-------VSQ 364
K I K+ + I+ G + + W D W +T RGC +M V++
Sbjct: 240 KKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGC-IDMGITLHASVAE 298
Query: 365 LIMNGTWNINLINMCFN-NDIGRSILSINLNPNEEDNTIWTLTKSGN-------FSLKSM 416
++N + + D+ + L E+ T+ GN F+ K
Sbjct: 299 AVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKET 353
Query: 417 YNFLRNQTIYNNQNQMDWFFIWNMNTIPRIKLFLWKCCTNSLPVRAKIGKF-IGNNYSCV 475
+ R + N + WF + P+ + W N L ++ + G + SCV
Sbjct: 354 WAATREPKLKVNWYKGVWF----SHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCV 409
Query: 476 NCNE-EETLDNVMLHCSFAKAIWFNFNIRTDTINTTTQW 513
C+ ET D++ C ++ +W + + + T +W
Sbjct: 410 LCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTNRW 448
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 111/451 (24%), Positives = 193/451 (42%), Gaps = 57/451 (12%)
Query: 82 LAIKHLLFADDCIIFGQNSLENIYNLKQILKEFSEASGQMINYAKSNIFFPK-NSHPKFE 140
+ I HL FADD ++F +I + QI +F++ SG I+ KS I+ + K +
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMAGVKDNDKAD 65
Query: 141 RMIIRELKVHQSSSGDKYLGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVV 200
I+ + +YLG L + + L+ +I+ ++ KW LS AGR +
Sbjct: 66 --ILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQL 123
Query: 201 ISTIAAAVPRYQMQCFALPKGISDNIESIQRTYWWGKSK---TFHTINWNSICKPRNQGG 257
IS++ ++ + M F LP I+SI ++ W + + W+ +C P+++GG
Sbjct: 124 ISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGG 183
Query: 258 LGLRLPQLDNQAFLHKLNWRIVKNLEAIWVQVL------KGKYFHNSLKPTQPKNHHSWT 311
LG+R + N+ L KL WR++ + ++WVQ L KG ++ S T SW
Sbjct: 184 LGIRSLKEANKVSLLKLIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWM 238
Query: 312 WKSISKYHHNLDSLIFWSINKGEHINIWTDYWIP-NHPPPITNDRGCSFEMVSQLIMNGT 370
WK I K+ + I+ G + + W D W +T RGC + M T
Sbjct: 239 WKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGC-------IDMGIT 291
Query: 371 WNINLINMCFNNDIGR----SILSINLNPNE---------EDNTIWTLTKSGN------- 410
+ ++ N+ R ++L I E ED W GN
Sbjct: 292 LHASVAEAVVNHRPRRHRHDTLLRIEDVIAEVRHQGLTSGEDTVRW----KGNGDIFKPC 347
Query: 411 FSLKSMYNFLRNQTIYNNQNQMDWF-FIWNMNTIPRIKLFLWKCCTNSLPVRAKIGKF-I 468
F+ K + R + +++W+ +W + P+ + W N L ++ +
Sbjct: 348 FNTKETWAATREPKL-----KVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNA 402
Query: 469 GNNYSCVNCNE-EETLDNVMLHCSFAKAIWF 498
G + SCV C+ ET D++ C ++ + F
Sbjct: 403 GADSSCVLCHHLVETRDHLFFTCPYSAEVPF 433
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 166/385 (43%), Gaps = 44/385 (11%)
Query: 157 KYLGTKLFIDRNKKQAFNSLITQIKNKLAKWQTHLLSQAGRSVVISTIAAAVPRYQMQCF 216
+YLG L + + L+ +I+ ++ KW LS AGR +IS++ ++ + M F
Sbjct: 26 RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85
Query: 217 ALPKGISDNIESIQRTYWWGKSK---TFHTINWNSICKPRNQGGLGLRLPQLDNQAFLHK 273
LP I+SI ++ W + + W+ +C P+++GGLG+R + N+ L K
Sbjct: 86 RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLK 145
Query: 274 LNWRIVKNLEAIWVQVL------KGKYFHNSLKPTQPKNHHSWTWKSISKYHHNLDSLIF 327
L WR++ + ++WVQ L KG ++ S T SW WK I K+ +
Sbjct: 146 LIWRMLSS-TSLWVQWLRLYLLRKGSFWSISGNTTLG----SWMWKKILKHRALASGFVK 200
Query: 328 WSINKGEHINIWTDYWIP-NHPPPITNDRGCSFEM-------VSQLIMNGTWNINLINMC 379
I+ G + + W D W +T RGC +M V++ ++N + +
Sbjct: 201 HDIHNGSNTSFWFDNWSKIGRLIDVTGHRGC-IDMGITLHASVAEAVVNHRPRRHRHDTL 259
Query: 380 FN-NDIGRSILSINLNPNEEDNTIWTLTKSGN-------FSLKSMYNFLRNQTIYNNQNQ 431
D+ + L E+ T+ GN F+ K + R + +
Sbjct: 260 LRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKETWAATREPKL-----K 309
Query: 432 MDWF-FIWNMNTIPRIKLFLWKCCTNSLPVRAKIGKF-IGNNYSCVNCNE-EETLDNVML 488
++W+ +W + P+ + W N L ++ + G + SCV C+ ET D++
Sbjct: 310 VNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFF 369
Query: 489 HCSFAKAIWFNFNIRTDTINTTTQW 513
C ++ +W + + + T +W
Sbjct: 370 TCPYSAEVWSTLTRKLLSQHFTNRW 394