BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0340.1
(597 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 137 1e-33
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 137 1e-33
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 121 1e-31
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 51 2e-07
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 46 1e-05
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 90/131 (68%)
Query: 467 VPLPSIAEPTSYKIAIKDPNWKKAMEDEFQALMGNETWSLIPKTSNMNILECKWVFKVKY 526
V + EP++Y A + W AM+DE A+ TW + N + CKWV+K+KY
Sbjct: 78 VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137
Query: 527 NSNGTIEIYKARLVAQGYTQQEGIDYVETFSPVVKIQTVRVVLTVAISHHWPIQQLDVSN 586
NS+GTIE YKARLVA+GYTQQEGID++ETFSPV K+ +V+++L ++ +++ + QLD+SN
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197
Query: 587 AFLYGHLTESI 597
AFL G L E I
Sbjct: 198 AFLNGDLDEEI 208
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 90/131 (68%)
Query: 467 VPLPSIAEPTSYKIAIKDPNWKKAMEDEFQALMGNETWSLIPKTSNMNILECKWVFKVKY 526
V + EP++Y A + W AM+DE A+ TW + N + CKWV+K+KY
Sbjct: 78 VCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKY 137
Query: 527 NSNGTIEIYKARLVAQGYTQQEGIDYVETFSPVVKIQTVRVVLTVAISHHWPIQQLDVSN 586
NS+GTIE YKARLVA+GYTQQEGID++ETFSPV K+ +V+++L ++ +++ + QLD+SN
Sbjct: 138 NSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISN 197
Query: 587 AFLYGHLTESI 597
AFL G L E I
Sbjct: 198 AFLNGDLDEEI 208
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 121 bits (303), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 79/115 (68%), Gaps = 7/115 (6%)
Query: 474 EPTSYKIAIKDPNWKKAMEDEFQALMGNETWSLIPKTSNMNILECKWVFKVKYNSNGTIE 533
EP S A+KDP W +AM++E AL N+TW L+P N NIL CKWVFK K +S+GT++
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 534 IYKARLVAQGYTQQEGIDYVETFSPVVKIQTVRVVLTVAISHHWPIQQLDVSNAF 588
KARLVA+G+ Q+EGI +VET+SPVV+ T+R +L VA QQL+V +
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA-------QQLEVGQSI 134
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 222 NRQITSVGNTLLFQASMPKEFWFHAYAAATYIINRTPSKLLSYKTPYELLFDKTPNYAMI 281
NR I ++L + +PK F A A +IIN+ PS +++ P E+ F P Y+ +
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 282 KVFGSLCYPYLGNTKSDKLSPKSSK 306
+ FG C Y+ + KL P++ K
Sbjct: 62 RRFG--CVAYI-HCDEGKLKPRAKK 83
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 44 DTEIACLARGTAETCHNRLGHASQEVILLLEREKRI---KITSKNFKDVCSSCQLGKSQR 100
++ +A A+ H+RL H SQ + LL ++ + K++S F C C GK+ R
Sbjct: 58 ESNLAETAKDETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKF---CEDCIYGKTHR 114
Query: 101 LPFHISDSRTSAPLQLVHCDIWGPAPV 127
+ F T PL VH D+WG V
Sbjct: 115 VNFSTGQHTTKNPLDYVHSDLWGAPSV 141