BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0380.1
(817 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11650.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 182 2e-51
AT5G19350.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 183 2e-50
AT5G19350.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 183 2e-50
AT1G11650.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 182 3e-50
AT4G27000.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 166 2e-44
>AT1G11650.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:3914895-3917301 FORWARD LENGTH=306 | 201606
Length = 306
Score = 182 bits (463), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 115/162 (70%), Gaps = 8/162 (4%)
Query: 250 PPQQTQPYMMPQQQQQSYPDPQPTSADEVRTLLISDLQPWMDERYIHGCFANTREVVNVK 309
PPQ P Q + P QPT+ADE+RTL I DLQ WMDE +++GCFA+T E+V+ K
Sbjct: 39 PPQMWNP------QAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAK 92
Query: 310 VIRNKQTGQYECYGFVEFVSHAAAERILQTYNRSLMPTV-EQTFRMNWTSFGSGVKRQDS 368
VIRNKQTGQ E YGF+EF SHAAAER+LQT+N + +P+ +Q FR+NW S SG KR DS
Sbjct: 93 VIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS 152
Query: 369 NADFINFVGDLTSDVTDYTLHETFPSHYSSVRDAKVITDNST 410
D+ FVGDL +DVTDY L ETF + Y SV+ AKV+ D T
Sbjct: 153 -PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVT 193
>AT5G19350.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:6518978-6521295 FORWARD LENGTH=425 | 201606
Length = 425
Score = 183 bits (465), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 110/151 (72%), Gaps = 3/151 (1%)
Query: 260 PQQQQQSYPDPQPTSADEVRTLLISDLQPWMDERYIHGCFANTREVVNVKVIRNKQTGQY 319
PQ Q SY PQ + +EVRTL I DLQ W+DE Y+ CF+ T E+V+VKVIRNK TGQ
Sbjct: 7 PQPPQGSYHHPQ--TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQP 64
Query: 320 ECYGFVEFVSHAAAERILQTYNRSLMPTVEQTFRMNWTSFGSGVKRQDSNADFINFVGDL 379
E YGF+EF+SHAAAER LQTYN + MP E TFR+NW SFGSG ++ D+ D FVGDL
Sbjct: 65 EGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSG-QKVDAGPDHSIFVGDL 123
Query: 380 TSDVTDYTLHETFPSHYSSVRDAKVITDNST 410
DVTDY L ETF HYSSVR AKV+TD ST
Sbjct: 124 APDVTDYLLQETFRVHYSSVRGAKVVTDPST 154
>AT5G19350.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr5:6518978-6521295 FORWARD LENGTH=421 | 201606
Length = 421
Score = 183 bits (465), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/151 (62%), Positives = 110/151 (72%), Gaps = 3/151 (1%)
Query: 260 PQQQQQSYPDPQPTSADEVRTLLISDLQPWMDERYIHGCFANTREVVNVKVIRNKQTGQY 319
PQ Q SY PQ + +EVRTL I DLQ W+DE Y+ CF+ T E+V+VKVIRNK TGQ
Sbjct: 7 PQPPQGSYHHPQ--TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQP 64
Query: 320 ECYGFVEFVSHAAAERILQTYNRSLMPTVEQTFRMNWTSFGSGVKRQDSNADFINFVGDL 379
E YGF+EF+SHAAAER LQTYN + MP E TFR+NW SFGSG ++ D+ D FVGDL
Sbjct: 65 EGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSG-QKVDAGPDHSIFVGDL 123
Query: 380 TSDVTDYTLHETFPSHYSSVRDAKVITDNST 410
DVTDY L ETF HYSSVR AKV+TD ST
Sbjct: 124 APDVTDYLLQETFRVHYSSVRGAKVVTDPST 154
>AT1G11650.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:3914895-3917941 FORWARD LENGTH=405 | 201606
Length = 405
Score = 182 bits (462), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 115/162 (70%), Gaps = 8/162 (4%)
Query: 250 PPQQTQPYMMPQQQQQSYPDPQPTSADEVRTLLISDLQPWMDERYIHGCFANTREVVNVK 309
PPQ P Q + P QPT+ADE+RTL I DLQ WMDE +++GCFA+T E+V+ K
Sbjct: 39 PPQMWNP------QAAAPPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAK 92
Query: 310 VIRNKQTGQYECYGFVEFVSHAAAERILQTYNRSLMPTV-EQTFRMNWTSFGSGVKRQDS 368
VIRNKQTGQ E YGF+EF SHAAAER+LQT+N + +P+ +Q FR+NW S SG KR DS
Sbjct: 93 VIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS 152
Query: 369 NADFINFVGDLTSDVTDYTLHETFPSHYSSVRDAKVITDNST 410
D+ FVGDL +DVTDY L ETF + Y SV+ AKV+ D T
Sbjct: 153 -PDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVT 193
>AT4G27000.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr4:13554983-13557763 REVERSE LENGTH=415 | 201606
Length = 415
Score = 166 bits (419), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 94/139 (67%)
Query: 272 PTSADEVRTLLISDLQPWMDERYIHGCFANTREVVNVKVIRNKQTGQYECYGFVEFVSHA 331
P SA E+R+L I DLQPWMDE Y+ F T E KVIRNKQ G E YGF+EFV+HA
Sbjct: 73 PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHA 132
Query: 332 AAERILQTYNRSLMPTVEQTFRMNWTSFGSGVKRQDSNADFINFVGDLTSDVTDYTLHET 391
AER LQTYN + MP+ EQ FR+NW G+G +RQ + FVGDL DVTD+ L ET
Sbjct: 133 TAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTET 192
Query: 392 FPSHYSSVRDAKVITDNST 410
F + YSSV+ AKV+ D +T
Sbjct: 193 FKAVYSSVKGAKVVNDRTT 211