BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0390.1
(132 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59790.1 | UPSTREAM OF FLC protein (DUF966) | Chr5:24090950-2... 75 2e-16
AT5G59790.2 | UPSTREAM OF FLC protein (DUF966) | Chr5:24090950-2... 74 4e-16
AT2G28150.1 | UPSTREAM OF FLC protein (DUF966) | Chr2:12000015-1... 66 2e-13
AT2G25680.1 | molybdate transporter 1 | Chr2:10933167-10934537 R... 65 5e-13
AT3G46110.2 | UPSTREAM OF FLC-like protein (DUF966) | Chr3:16932... 60 2e-11
>AT5G59790.1 | UPSTREAM OF FLC protein (DUF966) |
Chr5:24090950-24092804 FORWARD LENGTH=423 | 201606
Length = 423
Score = 74.7 bits (182), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 43/52 (82%), Gaps = 2/52 (3%)
Query: 22 NPERTKVWIEPKNEH--HRRVPVVYYLSKNGHLQHPHFIEVSLSSNDGLYLK 71
+P+R ++W EP+ + +R+VPVVYYL +NG L HPHFIEV+LSS+DGLYLK
Sbjct: 27 SPDRNRIWSEPRLKPVVNRKVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLK 78
>AT5G59790.2 | UPSTREAM OF FLC protein (DUF966) |
Chr5:24090950-24092426 FORWARD LENGTH=386 | 201606
Length = 386
Score = 73.6 bits (179), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 43/52 (82%), Gaps = 2/52 (3%)
Query: 22 NPERTKVWIEPKNEH--HRRVPVVYYLSKNGHLQHPHFIEVSLSSNDGLYLK 71
+P+R ++W EP+ + +R+VPVVYYL +NG L HPHFIEV+LSS+DGLYLK
Sbjct: 27 SPDRNRIWSEPRLKPVVNRKVPVVYYLCRNGQLDHPHFIEVTLSSHDGLYLK 78
>AT2G28150.1 | UPSTREAM OF FLC protein (DUF966) |
Chr2:12000015-12002227 FORWARD LENGTH=540 | 201606
Length = 540
Score = 66.2 bits (160), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 21 INPERTKVWIEPKNEHH---RRVPVVYYLSKNGHLQHPHFIEVSLSSNDGLYLK 71
++PER KVW E ++H ++V +VYYLSKN L+HPHF+EV +SS +GLYL+
Sbjct: 12 VSPERAKVWTEKSPKYHQKIKKVQIVYYLSKNRQLEHPHFMEVLISSPNGLYLR 65
>AT2G25680.1 | molybdate transporter 1 | Chr2:10933167-10934537
REVERSE LENGTH=456 | 201606
Length = 456
Score = 65.1 bits (157), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 37/54 (68%)
Query: 72 GTTLIFNAIYSIITGFLNGIPRPNQPMKSVADVAISQSHTHLTIPQIMVGGISS 125
GTTLIF IY+ ITG + G+P P QPMKS+A VAIS + IP+IM GI +
Sbjct: 64 GTTLIFTGIYNAITGAVYGVPMPVQPMKSIAAVAISSTAEDFGIPEIMAAGICT 117
>AT3G46110.2 | UPSTREAM OF FLC-like protein (DUF966) |
Chr3:16932244-16933359 FORWARD LENGTH=311 | 201606
Length = 311
Score = 60.1 bits (144), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 32/41 (78%)
Query: 31 EPKNEHHRRVPVVYYLSKNGHLQHPHFIEVSLSSNDGLYLK 71
+ K R VPVVYYLS+NG L HPHFIEV LSS++GLYLK
Sbjct: 11 DSKPSRERIVPVVYYLSRNGRLDHPHFIEVPLSSHNGLYLK 51