BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0440.1
(290 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 45 5e-06
AT2G15180.1 | Zinc knuckle (CCHC-type) family protein | Chr2:658... 48 7e-06
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 86 AAVWWDQLQRQRRGQRRAPIQNWPSMKENLRERFLPPDYQQHLFMTYQNCRQ 137
AA WW Q Q+ R+ + PI++W +KE L + FLPP Y + +N +Q
Sbjct: 2 AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQ 53
>AT2G15180.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:6588743-6590167 REVERSE LENGTH=474 | 201606
Length = 474
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 45 GYLSIEEFLDWLHEVERQVNMSYIVPGEQMVNIIACRLKGSAAVWWDQLQRQRRGQRRAP 104
GYL E +++ E E ++I +LKGSA WWDQ + R +RRAP
Sbjct: 118 GYLQWESNMNYYFEFHSTAQ-------EDKLSIALGQLKGSALWWWDQDEYNRWYERRAP 170
Query: 105 IQNWPSMKENLRERFLP 121
I+ W +K N+ ++ P
Sbjct: 171 IRTWERLKWNMCAKYSP 187