BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0480.1
(364 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 79 6e-16
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 75 8e-15
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 75 2e-14
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 54 7e-08
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 54 9e-08
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 118/268 (44%), Gaps = 42/268 (15%)
Query: 77 WKKKHMLPKIQIFVWKLINEGLPTLSNIHKRIPEKSETCKLCDLGEEETTHHLFRSCPLY 136
WK K PKI+ F+WKL++ L T N+ +R C C E+ET+ HLF C
Sbjct: 19 WKLK-TAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRC-CQEDETSQHLFFDCFYA 76
Query: 137 QDLLRKAGLKNLKYITTNPI----------KCLANILSKKEKGNQEWYTVTYLLWFWWKT 186
Q + R +G+ + + TT CLAN + Q + ++LW WK+
Sbjct: 77 QQVWRASGIPHQELRTTGITMETKMELLLSSCLAN------RQPQLFNLAIWILWRLWKS 130
Query: 187 RNELYFQNKKPDLIRCWWLTTEELRY-VSDLALTNTTNNSL--QVN------------HW 231
RN+L FQ K W T + R V + TNT SL QV+ W
Sbjct: 131 RNQLVFQQKSI----SWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKW 186
Query: 232 CPPPLGTIKINCDGSFKESSSSCAA--IAKDLEGTILGFKTKSIESVS--PLQSEMSAEE 287
PP IK N DG+F + + A + +D G +G ++I S + L+SE A
Sbjct: 187 QRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMG-SGQAIGSTTSDSLESEFQALI 245
Query: 288 LGITLAVELNQPPYIVESDSRILVDLIS 315
+ + A I E DS+ + +L++
Sbjct: 246 IAMQHAWSQGYRKVIFEGDSKQVEELMN 273
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 146/339 (43%), Gaps = 54/339 (15%)
Query: 57 EIKELPVKSQEAHEFPWKDFWKKKHMLPKIQIFVWKLINEGLPTLSNIHKRIPEKSETCK 116
E + P S E + WK H+ PKI+ F+W+ + L T + + R + C+
Sbjct: 22 EAIQPPPGSTEVKQAIWK-----LHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQ 76
Query: 117 LCDLGEEETTHHLFRSCPLYQDLLRKAGLKNLKYITTN----PIKCLANI-----LSKKE 167
C + EEET HH+ +CP Q + R A + I N P N+ LSK +
Sbjct: 77 RCCI-EEETIHHIMFNCPYTQSVWRSANI-----IIGNQWGPPSSFEDNLNRLIQLSKTQ 130
Query: 168 KGNQ-EWYTVTYLLWFWWKTRNELYFQNK--KPDL-------IRCWWLTTEELRYVSDLA 217
N + + +++W WK+RN FQ K PD WL E +++
Sbjct: 131 TTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVH 190
Query: 218 L-TNTTNNSLQ-VNHWCPPPLGTIKINCDGSFKESS--SSCAAIAKDLEGTILGFKTKSI 273
+ TN S + + W PPP G +K N D + + S + ++ G I+ +
Sbjct: 191 VATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIRECNGHIVLCGNAKL 250
Query: 274 ESVSPLQSEMSAEELGITLAVEL---NQPPYI-VESDSRILVDLISAVDPIIPWRISHQI 329
+S + + AE LG A+++ + Y+ ESDS+ LV LI+ + H +
Sbjct: 251 QSST---CSLHAEALGFLHALQVIWAHGLRYVWFESDSKSLVTLINNGE-------DHSL 300
Query: 330 NG-LRSRVNSNCLEVTYC-----NRIHNMEAHELAASVH 362
G L + L++ YC NR N A LA+ VH
Sbjct: 301 LGTLIYDIRHWMLKLPYCSLEFVNRERNSAADALASHVH 339
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 134/335 (40%), Gaps = 38/335 (11%)
Query: 8 WNTNNIKTWFTETEARAIINTKIKQVNQNDVLIWKPKESGQFSAKSFYVEIKELPVKSQE 67
W + I+ F E E + I + D W SG ++ KS Y + ++ K
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 68 AHEFP-------WKDFWKKKHMLPKIQIFVWKLINEGLPTLSNIHKRIPEKSETCKLCDL 120
E ++ WK + PKIQ F+WK ++ LP + R K C C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTS-PKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPS 300
Query: 121 GEEETTHHLFRSCPLYQDLLRKAGL--------KNLKYITTNPIKCLANILSKKEKGNQE 172
+E H LF+ C + + + + Y+ + L N + EK +Q
Sbjct: 301 CKETVNHLLFK-CTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQ- 358
Query: 173 WYTVTYLLWFWWKTRNELYFQNKK----------PDLIRCWWLTTEELRYVSDLALTNTT 222
V +LLW WK RNEL F+ ++ D + W + TE ++ T
Sbjct: 359 --LVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTE-----AESCGTKPQ 411
Query: 223 NNSLQVNHWCPPPLGTIKINCDGSFKESSSSCAA--IAKDLEGTILGFKTKSIESV-SPL 279
N W PPP +K N D ++ + C + ++ +G + +++ + S L
Sbjct: 412 VNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVL 471
Query: 280 QSEMSAEELGITLAVELNQPPYIVESDSRILVDLI 314
++E+ A + I ESDS++L++++
Sbjct: 472 EAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEIL 506
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 24/250 (9%)
Query: 83 LPKIQIFVWKLINEGLPTLSNIHKRIPEKSETCKLCDLGEEETTHHLFRSCPLYQDLLRK 142
+PKI++F+WK LP + + +R + C C G ET+ H+ C +
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARC--GAPETSTHMLFHCDFAAQVWNL 58
Query: 143 AGLKNLKYITTNPIKCLANILSKK----EKGNQEWYTVTYLLWFWWKTRNELYFQNKKPD 198
A L+ PI N+L K G ++ W WK RN+L FQN
Sbjct: 59 APLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFS 118
Query: 199 LIRCWWLTTEELRYVSDLALTNTTNNSL-QVNHWCPPPLGTIKIN------CDGSFKESS 251
+I + V D + +L +V P P T + D ++++ S
Sbjct: 119 VIE------TVTKAVQDALAWQSAQLALPKVRVATPRPNSTTTLTHDFLCYVDAAWQQQS 172
Query: 252 SSCAA-----IAKDLEGTILGFKTKSIESVSPLQSEMSAEELGITLAVELNQPPYIVESD 306
S + E I F SPL +E A + + A++L + +V SD
Sbjct: 173 SLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLERSDLLVLSD 232
Query: 307 SRILVDLISA 316
S+ +VD +++
Sbjct: 233 SKSIVDALNS 242
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/332 (18%), Positives = 136/332 (40%), Gaps = 26/332 (7%)
Query: 8 WNTNNIKTWFTETEARAIINTKIKQVNQNDVLIWKPKESGQFSAKSFYVEIKELPVKSQE 67
W+ + I + +++ I + + + D +IW +G+++ +S Y + P +
Sbjct: 88 WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIP 147
Query: 68 AHEFPWKDFWKKKHM-----LPKIQIFVWKLINEGLPTLSNIHKRIPEKSETCKLCDLGE 122
A P K + +PK++ F+W+ +++ L T + R +C C
Sbjct: 148 AINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHREN 207
Query: 123 EETTHHLFRSCPLYQDLLR--KAGLKNLKYITTNPIKCLANILS-KKEKGNQEWYTV--T 177
E H LF +CP R + L + ++ + + ++NIL+ ++ +++ +
Sbjct: 208 ESINHALF-TCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPV 266
Query: 178 YLLWFWWKTRNELYFQNKKPDLIRCW---------WLTTEELRYVSDLALTNTTNNSLQV 228
+L+W WK RN + F + + WL + + N ++
Sbjct: 267 WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIE- 325
Query: 229 NHWCPPPLGTIKINCDGSF--KESSSSCAAIAKDLEGTILGFKTKSIESVS-PLQSEMSA 285
W PP +K N D F ++ ++ I ++ GT + + + + S PL++E A
Sbjct: 326 --WRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKA 383
Query: 286 EELGITLAVELNQPPYIVESDSRILVDLISAV 317
+ +E D + L++LI+ +
Sbjct: 384 LLAALQQTWIRGYTQVFMEGDCQTLINLINGI 415