BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0490.1
(330 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 80 3e-16
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 67 1e-13
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 68 2e-12
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 5 SRKQKNRIHELKLSSGRSSKNKEEIENEFISFFQNLFTGD---LVNDPPAEVMNAYKVLS 61
+ + KN I L++ +N +++ ++++ +L D L D + + +
Sbjct: 460 ANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSDSDILTPDSVQRIKDIHPFRC 519
Query: 62 VEQLAD-ISRTPSAEEIKAVVMEMGSIKSPGPDGLPCFFFQHHWEVIGRELIQYIQQAFS 120
+ LA +S PS +EI A V M K+PGPD FF W V+ I +++ F
Sbjct: 520 NDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFR 579
Query: 121 TCKIDPQLNYTTIALIPKIKNPSTASEFRPISLCNSVYKFIT 162
T + + N T I LIPK+ S FRP+S C VYK IT
Sbjct: 580 TGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKIIT 621
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 67.0 bits (162), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 262 INGSIVRDFSVSRGLRQGCPLSPYLFILCSRSLSLLINHYENKGKFTGYKVNPAAPSITH 321
ING+ + SRGLRQG PLSPYLFILC+ LS L + +G+ G +V+ +P I H
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 322 LLFVDD 327
LLF DD
Sbjct: 74 LLFADD 79
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 48/93 (51%)
Query: 165 IANRLRPFLEECILWNQNVFVPNRQIMDNIVITKELLHSMHSSRAKKCTFSLKMDMAKAY 224
+ RL+P + I Q F+P R DNIV +E +HSM + K LK+D+ KAY
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 225 DRVSWDFLQTVLRSTGLSGLILDLIMSCVSSSR 257
DR+ WD+L+ L S G + L I +R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGAR 93