BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0540.1
(257 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 72 3e-14
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 64 1e-11
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 56 5e-09
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 45 3e-05
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 72.0 bits (175), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 13/188 (6%)
Query: 18 FITEKLDGSNYLMWRDQVETLLATYDLLGLLTGSIEEPPQLKIKQGIEQVNPDFQLWRSK 77
F+T L+ NY +WR+ ETL ++ +LG + GS P + + W+ +
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPMTEKR------------WKER 70
Query: 78 ESFVKSYLKSTLSKSVYYDTYGLK-SAKDMWDYLNLTNNESLESKKDQLRRKLQTIKKGS 136
+ VK ++ T++ S+ + +A+D+W L ++ E++ Q +L+T
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDD 130
Query: 137 ATVAEYLRELKQIADALISVHDRISESELVRLAIQGLGSDYDQFIIAIRANNEHLTLAHL 196
+V EY ++LK ++D L +V IS+ LV + GL YD + I+ + +
Sbjct: 131 LSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEA 190
Query: 197 KSRLIQHE 204
+S L+ E
Sbjct: 191 RSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 12 ISSVTSFITEKLD--GSNYLMWRDQVETLLATYDLLGLLTGSIEEPPQLKIKQGIEQVNP 69
+S++ S I LD SNY WR+ T ++D++G + G++ + VN
Sbjct: 13 VSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTL-------LPTNANDVN- 64
Query: 70 DFQLWRSKESFVKSYLKSTLSKSVYYDTYGLKS-AKDMWDYLNLTNNESLESKKDQLRRK 128
W+ ++ VK L TL+ + ++ S ++D+W + + +++ +L +
Sbjct: 65 ----WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSE 120
Query: 129 LQTIKKGSATVAEYLRELKQIADALISVHDRISESELVRLAIQGLGSDYDQFIIAIR 185
L+T G VA+Y R++K++AD+L +V +++ LV + GL +D I I+
Sbjct: 121 LRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 10 PPISSVTSFITEKL--DGSNYLMWRDQVETLLATYDLLGLLTGSIEEPPQLKIKQGIEQV 67
P I + F +KL D NY+ W+ + + L G + G++ +P +
Sbjct: 22 PDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP---------DPF 72
Query: 68 NPDFQLWRSKESFVKSYLKSTLSKSVYYDTYGLKSAKDMWDYLNLTNNESLESKKDQLRR 127
+P +Q W + V +L ++++ + ++A MW+ L ++ K QLRR
Sbjct: 73 SPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRR 132
Query: 128 KLQTIKKGSATVAEYLRELKQI 149
+L T+++G +V EY +L ++
Sbjct: 133 RLATLRQGGDSVEEYFGKLSKV 154
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 15/219 (6%)
Query: 22 KLDGSNYLMWRDQVETLLATYDLLGLLTGSIEEPPQLKIKQG-------IEQVNPDFQLW 74
+ DG +YL W Q+E L L +L+ E P + QG I + + + W
Sbjct: 197 RFDGKSYLYWASQMELFLKQLKLTYVLS---EPCPSIGSSQGPETNPREITRADATGKKW 253
Query: 75 RSKESFVKSYLKSTLSKSVYYD-TYGLKSAKDMWDYLN-LTNNESLESKKDQLRRKLQTI 132
+ ++L ++LS +Y + K AK++WD L + + +SK+ Q+R+ ++
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313
Query: 133 KKGSATVAEYLRELKQIADALISVHDRISESELVRLAIQGLGSDYDQFIIAIRANNEHLT 192
+ E ++ +IAD+++S + E+ V I + F + E+L
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPPSWRGFCTRL-MEEEYLP 372
Query: 193 LAHLKSRLIQHEQWLPQKETDQEGYYVRRTNTKQYNRQP 231
+ L R+ E+ L + + Y T + Q R P
Sbjct: 373 VWMLMERVKAEEELL--RNGAKGVTYRPATGSSQMERTP 409