BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0550.1
(377 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 49 5e-07
AT2G33190.1 | F-box only protein (DUF295) | Chr2:14067972-140691... 45 9e-05
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 300 HKHITELGNTLSFHCSLPKHLWFDTFSTAVYIINRLPTKTLQGTTPFEVLFHVSSDYSNL 359
++ I E ++ C LPK D +TAV+IIN+ P+ + P EV F YS L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 360 KVFGCACY 367
+ FGC Y
Sbjct: 62 RRFGCVAY 69
>AT2G33190.1 | F-box only protein (DUF295) | Chr2:14067972-14069111
FORWARD LENGTH=379 | 201606
Length = 379
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 29 SDDNDDFQECHTAIVLEDDIYYDCQPNYEQCYVSTVSNIANIKDKSWLADTGASSHMTHS 88
+D+DD + T ED Y D + YV T + NI D S +S
Sbjct: 189 GNDDDDKRWSITCTQCEDMAYKD-----NKLYVYTFDHYINILDFS------GNSPKEPM 237
Query: 89 EDNLSSIHPYTEKEAVMVGSGNFLPITSTGNSTLTTSTHEFGLSKVLCVPHLKRNMLSIS 148
E+N HP++ +A+ L +T G + S GL K +C+ L L I
Sbjct: 238 EENPYLSHPFSFVDAIYKLR---LAVTREGKVLIVLSL--VGLDKKICIYKLN---LKIG 289
Query: 149 KFTMGNSCSVEFLPWGYNIKDIHSQKIVTGGPIKNN----LYP--IEVHAFMLKQRTISA 202
+ + S E L +G+ + K ++GG +K++ LY + H +K++ I
Sbjct: 290 DWEIVESLGDEMLIFGHGVTIRAPDKDISGGGLKSDSICFLYDDYLSDHYLTMKRQPICG 349
Query: 203 HLAQTVTTYDTWHARLDDF-SKFSW 226
+T TWH RL+D SK W
Sbjct: 350 VFDLATSTI-TWHTRLEDLSSKICW 373