BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0590.1
(201 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 70 7e-14
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 57 1e-09
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 57 1e-09
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 69.7 bits (169), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 16/180 (8%)
Query: 17 IIPIKLQSANNLTWRSLFLPILKKYKVLDLIDGSR-PQPDQYLDSERRQLNPAYTEWLEE 75
+ + L N WR LF + + VL IDGS P P +E+R W E
Sbjct: 23 FVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTPM----TEKR--------WKER 70
Query: 76 DQTLLIWINSTLSESVISYV--VGNTLSLELWRNLEDSFASASTAHIFQLQENLRDLKKE 133
D + +WI T+++S++ + VG T + +LW +LE+ F A Q + LR +
Sbjct: 71 DGLVKMWIYGTITDSLLDTIIKVGCT-ARDLWLSLENLFRDNKEARALQFENELRTTTID 129
Query: 134 NDKMPDFLTKVKRISDSLAAAGSPASSAELVVSILRALPSDYDSFSAAIRLRKPPVTITE 193
+ + ++ K+K +SD L SP S LV+ +L L YD I+ + P + TE
Sbjct: 130 DLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTE 189
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 11 ITSMSNI---IPIKL--QSANNLTWRSLFLPILKKYKVLDLIDGSRPQPDQYLDSERRQL 65
I +SNI IP+ L + +N WR LFL + V+ IDG+ L + +
Sbjct: 10 IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNANDV 63
Query: 66 NPAYTEWLEEDQTLLIWINSTLSESVI--SYVVGNTLSLELWRNLEDSFASASTAHIFQL 123
N W + D + + + TL+ S+V +T S ++W +++ F + A +L
Sbjct: 64 N-----WQKRDGIVKLSLYGTLTPKQFQGSFVTSST-SRDIWLRIKNQFRNNKDARALRL 117
Query: 124 QENLRDLKKENDKMPDFLTKVKRISDSLAAAGSPASSAELVVSILRALPSDYDSFSAAIR 183
LR + ++ D+ K+K+++DSL P + LV+ +L L +D+ I+
Sbjct: 118 DSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIK 177
Query: 184 LRKP 187
R+P
Sbjct: 178 HRQP 181
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 56.6 bits (135), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 26 NNLTWRSLFLPILKKYKVLDLIDGSRPQPDQYLDSERRQLNPAYTEWLEEDQTLLIWINS 85
N + W+ F L+ K IDG+ P+PD + +P Y W + + ++ W+ +
Sbjct: 41 NYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF--------SPLYQPWEQCNAMVMYWLMN 92
Query: 86 TLSESVISYVVGNTLSLELWRNLEDSFASASTAHIFQLQENLRDLKKENDKMPDFLTKVK 145
++++ ++ V+ + ++W +L F I+QL+ L L++ D + ++ K+
Sbjct: 93 SMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLS 152
Query: 146 RI 147
++
Sbjct: 153 KV 154