BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0650.1
(92 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 44 3e-06
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 43.9 bits (102), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 2 RLSKVISSIISPFQGAFVNGRQILNGVMIANELIDS-RRKDGRRG-LVVKANLEEAYDR 58
RL +++++I P Q +F+ GR + ++ E + S RRK G +G +++K +LE+AYDR
Sbjct: 4 RLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDR 62