BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0680.1
(1325 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10650.2 | nuclear pore complex protein | Chr3:3325562-333081... 325 8e-92
AT3G10650.1 | nuclear pore complex protein | Chr3:3325562-333081... 325 8e-92
AT5G20200.1 | nucleoporin-like protein | Chr5:6816776-6821620 FO... 97 6e-20
AT1G59660.3 | Nucleoporin autopeptidase | Chr1:21924693-21929233... 48 7e-05
AT1G59660.2 | Nucleoporin autopeptidase | Chr1:21924693-21929233... 48 7e-05
>AT3G10650.2 | nuclear pore complex protein | Chr3:3325562-3330819
REVERSE LENGTH=1309 | 201606
Length = 1309
Score = 325 bits (833), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 259/684 (37%), Positives = 356/684 (52%), Gaps = 116/684 (16%)
Query: 16 KFRKRPGFRKNSTPYERPPTAIRN----PIEGSRNRWFSKIVDPASRIITKSAQVFFSSL 71
KFRK R TPY+RP T++RN + W SK+VDPA R+IT SAQ F SL
Sbjct: 22 KFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVDPAQRLITYSAQRLFGSL 81
Query: 72 FRKNL-----PAPPSVSETDHEPRGNAQEADLTVRS-----SGANGHVHREGDYPNTSSQ 121
RK L P + RG QE + + S NG + E +
Sbjct: 82 SRKRLGSGETPLQSPEQQKQLPERGVNQETKVGHKEDVSNLSMKNGLIRMEDTNASVDPP 141
Query: 122 ASGINDLEQILGQKTFTRAEIDRLTELLHSRTVDLPSENG--------IRTSLPSSSRTV 173
G DLE+IL KTFTR+E+DRLT LL S+ D + N + PS R
Sbjct: 142 KDGFTDLEKILQGKTFTRSEVDRLTTLLRSKAADSSTMNEEQRNEVGMVVRHPPSHERDR 201
Query: 174 TTQDNLEPEQVA---------LEQELASPAELAKAFMGNRPSKVSPSMLGLRSQALRQDL 224
T DN + L++ +ASPA+LAKA+MG+RPS+V+PSMLGLR QA R+D
Sbjct: 202 THPDNGSMNTLVSTPPGSLRTLDECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDS 261
Query: 225 PLLNNVPFTPKSPRMSLGPRHADRFAGVSENGYTTPRPRGRSAIYSMARTPYSRGHNSGT 284
LN PF KSP MSL + + + ENG+ TPR RGRSA+YSMARTPYSR +S
Sbjct: 262 VFLNRTPFPQKSPTMSLVTKPSGQRP--LENGFVTPRSRGRSAVYSMARTPYSRPQSS-- 317
Query: 285 PKIEAHMTPSTSSQLKWEKNTPSDGKQ----ASKRRISLLDNDIGSVGPIRRIRQKTSLG 340
KI + S S KWE++ PS +Q KRR S+LDNDIGSVGP+RRIRQK++L
Sbjct: 318 VKIGSLFQASPS---KWEESLPSGSRQGFQSGLKRRSSVLDNDIGSVGPVRRIRQKSNLS 374
Query: 341 MSPSKNMILSAPGSSLSNPVIADGSHAPREALSTQRRSLLDESKRITSDLSQSENGRDSI 400
S+++ L S LS V A+G S++ + I
Sbjct: 375 ---SRSLALPVSESPLS--VRANGGEKTTHT---------------------SKDSAEDI 408
Query: 401 NTTNFSSVPSQSTEMAQKILHQLDKLVDSPKQKSSELRLAAAREKSPSKLTLSMLQGKAL 460
++F+ VP++S+EMA KIL QLDKLV + REKSPSKL+ SML+G AL
Sbjct: 409 PGSSFNLVPTKSSEMASKILQQLDKLV-------------STREKSPSKLSPSMLRGPAL 455
Query: 461 RSLEDVNSSMFLRNAQNPVNTDCLGGRSVPSPRNSAPAKQDMTDEN------------GP 508
+SL++V + FL N L + SP +S+ KQ+++ E+ G
Sbjct: 456 KSLQNVEAPKFLGN---------LPEKKANSP-DSSYQKQEISRESVSREVLAQSEKTGD 505
Query: 509 KANGLQATGSTKDV-RSDKTSDLNVSDPVVKSPP-KRAFQMSAHEDYLELDDDSDSGIAA 566
+G TGS+KD K + +++ + + PP KR+F+MSAHED+LELDD D G A+
Sbjct: 506 AVDGTSKTGSSKDQDMRGKGVYMPLTNSLEEHPPKKRSFRMSAHEDFLELDD--DLGAAS 563
Query: 567 PTLNAGKEKLTPAVESRTFVAKTVTFGNPLVSSETSPASS-VANG-TDTGISDGKALPKD 624
+++ VE ++ ++ + PL SE P++S ++NG G S+G +
Sbjct: 564 TPCEVAEKQNAFEVE-KSHISMPIG-EKPLTPSEAMPSTSYISNGDASQGTSNGSLETER 621
Query: 625 SGF-AFAITPSTTAALPSTLASQP 647
+ F AF I A S +AS+P
Sbjct: 622 NKFVAFPI----EAVQQSNMASEP 641
>AT3G10650.1 | nuclear pore complex protein | Chr3:3325562-3330819
REVERSE LENGTH=1309 | 201606
Length = 1309
Score = 325 bits (833), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 259/684 (37%), Positives = 356/684 (52%), Gaps = 116/684 (16%)
Query: 16 KFRKRPGFRKNSTPYERPPTAIRN----PIEGSRNRWFSKIVDPASRIITKSAQVFFSSL 71
KFRK R TPY+RP T++RN + W SK+VDPA R+IT SAQ F SL
Sbjct: 22 KFRKPTARRSQKTPYDRPTTSVRNAGLGGGDVRGGGWLSKLVDPAQRLITYSAQRLFGSL 81
Query: 72 FRKNL-----PAPPSVSETDHEPRGNAQEADLTVRS-----SGANGHVHREGDYPNTSSQ 121
RK L P + RG QE + + S NG + E +
Sbjct: 82 SRKRLGSGETPLQSPEQQKQLPERGVNQETKVGHKEDVSNLSMKNGLIRMEDTNASVDPP 141
Query: 122 ASGINDLEQILGQKTFTRAEIDRLTELLHSRTVDLPSENG--------IRTSLPSSSRTV 173
G DLE+IL KTFTR+E+DRLT LL S+ D + N + PS R
Sbjct: 142 KDGFTDLEKILQGKTFTRSEVDRLTTLLRSKAADSSTMNEEQRNEVGMVVRHPPSHERDR 201
Query: 174 TTQDNLEPEQVA---------LEQELASPAELAKAFMGNRPSKVSPSMLGLRSQALRQDL 224
T DN + L++ +ASPA+LAKA+MG+RPS+V+PSMLGLR QA R+D
Sbjct: 202 THPDNGSMNTLVSTPPGSLRTLDECIASPAQLAKAYMGSRPSEVTPSMLGLRGQAGREDS 261
Query: 225 PLLNNVPFTPKSPRMSLGPRHADRFAGVSENGYTTPRPRGRSAIYSMARTPYSRGHNSGT 284
LN PF KSP MSL + + + ENG+ TPR RGRSA+YSMARTPYSR +S
Sbjct: 262 VFLNRTPFPQKSPTMSLVTKPSGQRP--LENGFVTPRSRGRSAVYSMARTPYSRPQSS-- 317
Query: 285 PKIEAHMTPSTSSQLKWEKNTPSDGKQ----ASKRRISLLDNDIGSVGPIRRIRQKTSLG 340
KI + S S KWE++ PS +Q KRR S+LDNDIGSVGP+RRIRQK++L
Sbjct: 318 VKIGSLFQASPS---KWEESLPSGSRQGFQSGLKRRSSVLDNDIGSVGPVRRIRQKSNLS 374
Query: 341 MSPSKNMILSAPGSSLSNPVIADGSHAPREALSTQRRSLLDESKRITSDLSQSENGRDSI 400
S+++ L S LS V A+G S++ + I
Sbjct: 375 ---SRSLALPVSESPLS--VRANGGEKTTHT---------------------SKDSAEDI 408
Query: 401 NTTNFSSVPSQSTEMAQKILHQLDKLVDSPKQKSSELRLAAAREKSPSKLTLSMLQGKAL 460
++F+ VP++S+EMA KIL QLDKLV + REKSPSKL+ SML+G AL
Sbjct: 409 PGSSFNLVPTKSSEMASKILQQLDKLV-------------STREKSPSKLSPSMLRGPAL 455
Query: 461 RSLEDVNSSMFLRNAQNPVNTDCLGGRSVPSPRNSAPAKQDMTDEN------------GP 508
+SL++V + FL N L + SP +S+ KQ+++ E+ G
Sbjct: 456 KSLQNVEAPKFLGN---------LPEKKANSP-DSSYQKQEISRESVSREVLAQSEKTGD 505
Query: 509 KANGLQATGSTKDV-RSDKTSDLNVSDPVVKSPP-KRAFQMSAHEDYLELDDDSDSGIAA 566
+G TGS+KD K + +++ + + PP KR+F+MSAHED+LELDD D G A+
Sbjct: 506 AVDGTSKTGSSKDQDMRGKGVYMPLTNSLEEHPPKKRSFRMSAHEDFLELDD--DLGAAS 563
Query: 567 PTLNAGKEKLTPAVESRTFVAKTVTFGNPLVSSETSPASS-VANG-TDTGISDGKALPKD 624
+++ VE ++ ++ + PL SE P++S ++NG G S+G +
Sbjct: 564 TPCEVAEKQNAFEVE-KSHISMPIG-EKPLTPSEAMPSTSYISNGDASQGTSNGSLETER 621
Query: 625 SGF-AFAITPSTTAALPSTLASQP 647
+ F AF I A S +AS+P
Sbjct: 622 NKFVAFPI----EAVQQSNMASEP 641
>AT5G20200.1 | nucleoporin-like protein | Chr5:6816776-6821620
FORWARD LENGTH=762 | 201606
Length = 762
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 139/501 (27%), Positives = 214/501 (42%), Gaps = 106/501 (21%)
Query: 11 GGAGGKFRKRPGFRKNSTPYERPPTAIRNPIEGSRNRWFSKIVDPASRII----TKSAQV 66
GG GGK +++ R +TPY RP +N ++ R W S+IVDPA RII T+
Sbjct: 22 GGVGGKLKRQSARRHAATPYSRP---TQNQVQ--RRPWISRIVDPAYRIISGGATRILPY 76
Query: 67 FFSSLFRKNLPAPPSVSETDH--EPRGNAQEAD------------LTVRSSGANGHVH-R 111
FFS+ A P + H E + N Q+ D ++ G +G +
Sbjct: 77 FFSNAASAPALAAPPEDQNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGTANVN 136
Query: 112 EGDYPNTSSQASG---------INDLEQILGQKTFTRAEIDRLTELLHSRTVDLP----S 158
EG++ + S+Q G I++LE+++ KTF++AEIDRL E++ SR +DLP
Sbjct: 137 EGNF-SISAQRRGKAALNDDVAISELERLMEGKTFSQAEIDRLIEMISSRAIDLPDVKRD 195
Query: 159 ENGIRTSL----------------PSSSRTVTTQDNLEPEQVA---------LEQELA-S 192
E + L P + ++ P +A + E+ S
Sbjct: 196 ERNLEIPLREGAKKNMSLFDKAKEPIGGKDANSEIWATPTPLAKSIILDGDKIRDEVGLS 255
Query: 193 PAELAKAFMGNRPSKVSPSMLGLRSQALRQDLPLLNNVPFTPKSPRMSLGPRHADRFAGV 252
PAELAKA+MG + S S R++ D +L KS S + + + G+
Sbjct: 256 PAELAKAYMGGQTSSSSSQGFVARNEKDCLDRSML-----VGKSSLASPSSKPSACWPGI 310
Query: 253 ---SENGYTTPRPRGRS-AIYSMARTPYSRGHNSGTPKIEAHMTPSTSSQLKWEKNTPSD 308
++G+ TP+ R S + + RTPYSR S + + +S L +PS
Sbjct: 311 KSSEQSGFATPQSRRESYGLQNFPRTPYSRTILSNSKSKLMQLQNDSSKHLS-NLQSPS- 368
Query: 309 GKQASKRRISLLDN--DIGSVGPIRRIRQKTSLGM-----SPSKNMILSAPGSSLSNPVI 361
Q+ +RR L D G GP RR RQ + M PS+ S N I
Sbjct: 369 --QSVERRYGQLSKGRDGGLFGPSRRTRQSATPSMVSPYSRPSRG------ASRFENSAI 420
Query: 362 ADGSHAPREALSTQRRSLLDESKRITSDLSQSENGRDSINTTNFSSVPSQSTEMAQKILH 421
S A S L S+ T G+ +VP+ S+++A+ IL
Sbjct: 421 MKSSEAGES-------SYLSRSQITTY-------GKHKEAEVGTLTVPTHSSQIARTILD 466
Query: 422 QLDKL--VDSPKQKSSELRLA 440
L++ +PK K++EL+LA
Sbjct: 467 HLERTQSQSTPKNKTAELKLA 487
>AT1G59660.3 | Nucleoporin autopeptidase | Chr1:21924693-21929233
FORWARD LENGTH=990 | 201606
Length = 990
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 126/259 (48%), Gaps = 78/259 (30%)
Query: 961 MFGSSSSTSFSTSAVSSSSGSDTSSLFGSSSQS--------------------------- 993
MFGSS++ F S++SS G+ T SLFG ++ +
Sbjct: 1 MFGSSNNNPFGQSSISSPFGTQTHSLFGQTNNNASNNPFATKPFGTSTPFGAQTGSSMFG 60
Query: 994 -TASPVFG-----SGFGSSPSP-ATTGFSFGASATTSATSSSSSAATGFSFGAAS----- 1041
T++ VFG S FG+SP ++ +FGAS+T S SS+S +FG S
Sbjct: 61 GTSTGVFGAPQTSSPFGASPQAFGSSTQAFGASSTPSFGSSNSPFGGTSTFGQKSFGLST 120
Query: 1042 ------------ASPATGSSSSAATGFAFGASPAAPATGSSSSAATGFS----FGASAAT 1085
+ PA G+S+ ++ FGAS PA G+SS+ A G S FGA+ T
Sbjct: 121 PQSSPFGSTTQQSQPAFGNSTFGSST-PFGAS-TTPAFGASSTPAFGVSNTSGFGAT-NT 177
Query: 1086 PAAGSSAATGF------SFGASAATPATGSASSAATGFSFGASAATPAVGSASSPATGLF 1139
P G++ TGF FGAS +TPA GS ++ A FGAS +TP GS+SSPA
Sbjct: 178 PGFGATNTTGFGGSSTPGFGAS-STPAFGSTNTPA----FGAS-STPLFGSSSSPA---- 227
Query: 1140 SFGASAATPAASSASSGAA 1158
FGAS PA + SSG A
Sbjct: 228 -FGAS---PAPAFGSSGNA 242
>AT1G59660.2 | Nucleoporin autopeptidase | Chr1:21924693-21929233
FORWARD LENGTH=990 | 201606
Length = 990
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 126/259 (48%), Gaps = 78/259 (30%)
Query: 961 MFGSSSSTSFSTSAVSSSSGSDTSSLFGSSSQS--------------------------- 993
MFGSS++ F S++SS G+ T SLFG ++ +
Sbjct: 1 MFGSSNNNPFGQSSISSPFGTQTHSLFGQTNNNASNNPFATKPFGTSTPFGAQTGSSMFG 60
Query: 994 -TASPVFG-----SGFGSSPSP-ATTGFSFGASATTSATSSSSSAATGFSFGAAS----- 1041
T++ VFG S FG+SP ++ +FGAS+T S SS+S +FG S
Sbjct: 61 GTSTGVFGAPQTSSPFGASPQAFGSSTQAFGASSTPSFGSSNSPFGGTSTFGQKSFGLST 120
Query: 1042 ------------ASPATGSSSSAATGFAFGASPAAPATGSSSSAATGFS----FGASAAT 1085
+ PA G+S+ ++ FGAS PA G+SS+ A G S FGA+ T
Sbjct: 121 PQSSPFGSTTQQSQPAFGNSTFGSST-PFGAS-TTPAFGASSTPAFGVSNTSGFGAT-NT 177
Query: 1086 PAAGSSAATGF------SFGASAATPATGSASSAATGFSFGASAATPAVGSASSPATGLF 1139
P G++ TGF FGAS +TPA GS ++ A FGAS +TP GS+SSPA
Sbjct: 178 PGFGATNTTGFGGSSTPGFGAS-STPAFGSTNTPA----FGAS-STPLFGSSSSPA---- 227
Query: 1140 SFGASAATPAASSASSGAA 1158
FGAS PA + SSG A
Sbjct: 228 -FGAS---PAPAFGSSGNA 242