BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0720.1
(185 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06490.1 | RING/U-box superfamily protein | Chr5:1977996-1978... 176 4e-56
AT2G35910.1 | RING/U-box superfamily protein | Chr2:15073225-150... 162 2e-50
AT5G07040.1 | RING/U-box superfamily protein | Chr5:2190344-2190... 114 3e-32
AT3G61550.1 | RING/U-box superfamily protein | Chr3:22776444-227... 110 3e-30
AT2G46160.2 | RING/U-box superfamily protein | Chr2:18963109-189... 106 8e-29
>AT5G06490.1 | RING/U-box superfamily protein | Chr5:1977996-1978589
REVERSE LENGTH=197 | 201606
Length = 197
Score = 176 bits (445), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 96/185 (51%), Positives = 119/185 (64%), Gaps = 24/185 (12%)
Query: 14 SDKIGGFGYGICVSIGILFLITTITLTSYYCSRASNVVTSPSPPPSASPSIHAHRHRHRR 73
+D++GG YGI VSIGIL LITTITLTSYYC+R+ SASP+ R +R
Sbjct: 17 TDRMGGLAYGIGVSIGILMLITTITLTSYYCTRSHI---------SASPTTTPRTRRRQR 67
Query: 74 DR-------QHTIDIHHEEEK-------GLDEATLKTYPKLLYSQAKKLHH-KKETTTNS 118
+ Q D +E GL E +K +PKL Y +A+ + +KE++T S
Sbjct: 68 ESNGTLPPGQERFDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTS 127
Query: 119 CCSICLADYKSTDTLRLLPDCYHLFHLKCVDPWLRLHPTCPVCRTTPVPSPMSTPLAEVV 178
CCSICLADYK D +R+LPDC HLFH CVDPWLRLHPTCPVCRT+P+PSP TP+A+VV
Sbjct: 128 CCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVV 187
Query: 179 PLSSR 183
P S R
Sbjct: 188 PFSRR 192
>AT2G35910.1 | RING/U-box superfamily protein |
Chr2:15073225-15073878 REVERSE LENGTH=217 | 201606
Length = 217
Score = 162 bits (409), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/179 (54%), Positives = 119/179 (66%), Gaps = 17/179 (9%)
Query: 7 DTGGGFLSDKIGGFGYGICVSIGILFLITTITLTSYYCSRASNVVTSPSPPPSASPSIHA 66
D G +D IGGF YGI VSIG+L LITTITLTSYYC+R + + +SPS
Sbjct: 51 DYNGLLGTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTR-NQLSSSPS----------Q 99
Query: 67 HRHRHRRDRQHTIDIHHEEEKGLDEATLKTYPKLLYSQAKKLHHKKETTTNSCCSICLAD 126
R H + + GLDE T+++YPK+LYS+AK TT SCC+ICL D
Sbjct: 100 TNQDSTRIHHHHHHVIIDVVPGLDEDTIQSYPKILYSEAKG------PTTASCCAICLGD 153
Query: 127 YKSTDTLRLLPDCYHLFHLKCVDPWLRLHPTCPVCRTTPVPSPMSTPLAEVVPLSSRMV 185
YK LR LPDC HLFHLKC+D WLRL+PTCPVCRT+P+P+P+STPLAEVVPL+S +
Sbjct: 154 YKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVA 212
>AT5G07040.1 | RING/U-box superfamily protein | Chr5:2190344-2190823
FORWARD LENGTH=159 | 201606
Length = 159
Score = 114 bits (284), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 92/169 (54%), Gaps = 25/169 (14%)
Query: 19 GFGYGICVSIGILFLITTITLTSYYCSRASNVVTSPSPPPSASPSIHAHRHRHRRDRQHT 78
G GYGI +++ IL LI+ I L SY C R+ + R
Sbjct: 12 GLGYGIAIAVSILVLISFIMLASYICIRSKST------------------GRDEATSDVV 53
Query: 79 IDI---HHEEEKGLDEATLKTYPKLLYSQAKKLHHKKETTTNSCCSICLADYKSTDTLRL 135
+D+ E + GLD +++YP+++ +++L N CSICL DY++ + +R
Sbjct: 54 LDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPN----NGPCSICLCDYEAREPVRC 109
Query: 136 LPDCYHLFHLKCVDPWLRLHPTCPVCRTTPVPSPMSTPLAEVVPLSSRM 184
+P+C H FH CVD WLR TCP+CR +P PS ++TPL+++VPL+ ++
Sbjct: 110 IPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLAFQI 158
>AT3G61550.1 | RING/U-box superfamily protein |
Chr3:22776444-22777082 FORWARD LENGTH=212 | 201606
Length = 212
Score = 110 bits (275), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 22/182 (12%)
Query: 19 GFGYGICVSIGILFLITTITLTSYYCSRASNVVTSPSPPPSASPSIHAHR-----HRHRR 73
G GY I +++G L LI+TI L+SY C RAS + S S + + + + R
Sbjct: 25 GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84
Query: 74 DRQHTIDIHHEEEKGLDEATLKTYPKLLYSQ-------AKKLH--HKKETTTNSCCSICL 124
++ + GLD + + +YPK +++ H +ETT CSICL
Sbjct: 85 AEDDDLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETT----CSICL 140
Query: 125 ADYKSTDTLRLLPDCYHLFHLKCVDPWLRLHPTCPVCRTTPVP----SPMSTPLAEVVPL 180
+Y + LR++P+C H FH+ C+D WL+L+ +CPVCR +P+P +P STPL+EVVPL
Sbjct: 141 CEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVVPL 200
Query: 181 SS 182
S
Sbjct: 201 SQ 202
>AT2G46160.2 | RING/U-box superfamily protein |
Chr2:18963109-18963753 FORWARD LENGTH=214 | 201606
Length = 214
Score = 106 bits (265), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 19 GFGYGICVSIGILFLITTITLTSYYCSRASNV-VTSPSPPPSASPSIHAHRHRHRRDRQH 77
GFGY I +++G L L++T+ L+SY C R S T+ S+ R + +
Sbjct: 34 GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93
Query: 78 TIDIHHEEEKGLDEATLKTYPKLLYSQ--AKKLHHKKETTTNSCCSICLADYKSTDTLRL 135
+ GLD+A + +YPK +S+ + ++ CSICL +YK + LR+
Sbjct: 94 EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153
Query: 136 LPDCYHLFHLKCVDPWLRLHPTCPVCRTTPVP----SPMSTPLAEVVPLS 181
+P+C H FHL C+D WL+L+ +CPVCR +P+P +P+STPL+EVVPLS
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203