BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0760.1
(122 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52380.1 | chloroplast RNA-binding protein 33 | Chr3:19421619... 153 1e-46
AT3G52150.2 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 85 8e-21
AT3G52150.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 85 8e-21
AT1G60000.1 | RNA-binding (RRM/RBD/RNP motifs) family protein | ... 82 6e-20
AT4G24770.2 | 31-kDa RNA binding protein | Chr4:12766223-1276795... 80 1e-18
>AT3G52380.1 | chloroplast RNA-binding protein 33 |
Chr3:19421619-19422855 FORWARD LENGTH=329 | 201606
Length = 329
Score = 153 bits (386), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 96/122 (78%)
Query: 1 MGPKIRGSYRGFVDSPYKIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGF 60
M KIR + R +VDSP+K+YAGNLGWNLTS+GLKD F D+PG+LGAKVIY+RN+G++RGF
Sbjct: 203 MRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGF 262
Query: 61 GFVTFSSAEDAQAAIDALNGVEVEGRPLRLNLAAEKANNFTSRPARQTEDFHENAVEAST 120
GF++F SAE+ Q+A+ +NGVEVEGR LRLNLA+E+ S P+ + + E ++E++
Sbjct: 263 GFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNE 322
Query: 121 SL 122
L
Sbjct: 323 VL 324
Score = 63.2 bits (152), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 18 KIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAIDA 77
++Y GNL + +TS L F + ++ +++YD+ + ++RGFGFVT S E+A+ A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 78 LNGVEVEGRPLRLNL 92
N ++ GR +++N
Sbjct: 177 FNSSQIGGRTVKVNF 191
>AT3G52150.2 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr3:19342074-19343090 FORWARD LENGTH=253 | 201606
Length = 253
Score = 84.7 bits (208), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 11 GFVDSPYKIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAED 70
FVDSPYK+Y GNL +T E L++ F+++ ++ AKV + K+ GFGFVTFSS ED
Sbjct: 171 AFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEED 230
Query: 71 AQAAIDALNGVEVEGRPLRLNLA 93
+AAI ALN +EG+ +R+N A
Sbjct: 231 VEAAIVALNNSLLEGQKIRVNKA 253
Score = 67.4 bits (163), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 18 KIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAIDA 77
++Y GN+ +T+E L + + +V+YD+ SG++R FGF T S EDA A ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 78 LNGVEVEGRPLRLNLAAEKANNFTSRPARQTED 110
LNG VEGR +++N+ + + Q+ED
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSED 169
>AT3G52150.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr3:19342074-19343090 FORWARD LENGTH=253 | 201606
Length = 253
Score = 84.7 bits (208), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 57/83 (68%)
Query: 11 GFVDSPYKIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAED 70
FVDSPYK+Y GNL +T E L++ F+++ ++ AKV + K+ GFGFVTFSS ED
Sbjct: 171 AFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEED 230
Query: 71 AQAAIDALNGVEVEGRPLRLNLA 93
+AAI ALN +EG+ +R+N A
Sbjct: 231 VEAAIVALNNSLLEGQKIRVNKA 253
Score = 67.4 bits (163), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 18 KIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAIDA 77
++Y GN+ +T+E L + + +V+YD+ SG++R FGF T S EDA A ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 78 LNGVEVEGRPLRLNLAAEKANNFTSRPARQTED 110
LNG VEGR +++N+ + + Q+ED
Sbjct: 137 LNGNTVEGREIKVNITEKPIASSPDLSVLQSED 169
>AT1G60000.1 | RNA-binding (RRM/RBD/RNP motifs) family protein |
Chr1:22093678-22094540 REVERSE LENGTH=258 | 201606
Length = 258
Score = 82.4 bits (202), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 62/85 (72%)
Query: 12 FVDSPYKIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDA 71
+ ++ +K++ GNL W +TSE L F + ++GA+V++D ++G++RG+GFV +SS +
Sbjct: 172 YPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEM 231
Query: 72 QAAIDALNGVEVEGRPLRLNLAAEK 96
+ A+++L+G E+EGR +R+NLA K
Sbjct: 232 ETALESLDGFELEGRAIRVNLAQGK 256
Score = 65.9 bits (159), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 18 KIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAIDA 77
K+Y GNL +N+ S L D +V+Y+R++G++RGF FVT S+ ED ID
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 78 LNGVEVEGRPLRLNLA 93
L+G E GR L++N A
Sbjct: 146 LDGTEYLGRALKVNFA 161
>AT4G24770.2 | 31-kDa RNA binding protein | Chr4:12766223-12767952
REVERSE LENGTH=329 | 201606
Length = 329
Score = 79.7 bits (195), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 57/80 (71%)
Query: 17 YKIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAID 76
+++Y GNL W++ + L+ F++ ++ A+V+YDR +G++RGFGFVT S ++ AI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 77 ALNGVEVEGRPLRLNLAAEK 96
AL+G +EGR +R+N+A E+
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
Score = 65.5 bits (158), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 18 KIYAGNLGWNLTSEGLKDTFADRPGLLGAKVIYDRNSGKARGFGFVTFSSAEDAQAAIDA 77
K++ GNL +++ S+ L F + A+VIY+R + ++RGFGFVT SS ++A+ A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 78 LNGVEVEGRPLRLNLAAEKANNFTSRPAR 106
N ++ GR L +N AA + SRP R
Sbjct: 211 FNRYDLNGRLLTVNKAAPRG----SRPER 235