BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000108.1_g0850.1
(386 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 97 9e-22
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 93 1e-20
ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase... 65 1e-12
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 97.4 bits (241), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 4/190 (2%)
Query: 9 ESIWKEKYRVAHVQLGDRNTKYFHAKAITRNRKNYISSVKREDNSWCSDTSEIFNL---- 64
ES +++K R+ +Q GD NT++FH + KN I ++ +D+ + +++ +
Sbjct: 432 ESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAY 491
Query: 65 FTLNLKKISSTTSQASPGIIKNLFTTQISVSQNTILTAAPNDEEIRAATFSLKPEAAPGP 124
+T L S + S IK++ + + + + L+A P+D+EI AA F++ APGP
Sbjct: 492 YTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGP 551
Query: 125 DGYPPFFYQSNWDTVKTDVVQMVRSFFHSSLLPPSTNHTHICLIPKTKSPQSNVDFRPIS 184
D + F+ +W VK + V+ FF + L N T I LIPK FRP+S
Sbjct: 552 DSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVS 611
Query: 185 LLNTTYKIIT 194
YKIIT
Sbjct: 612 CCTVVYKIIT 621
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 93.2 bits (230), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 197 LANRLKITLPDIISPFQAAYVPGRQITDNIIISQEISHSFKNKRGSKGFFGLKLDMSKAF 256
+ RLK + ++I P QA+++PGR TDNI+ QE HS + K+G KG+ LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 257 DRVEWHYLEDIMVNLGYDSHWIRLIHSCISSSSMVVLINGRPG----PSFNVSR-GLRQG 311
DR+ W YLED +++ G+ W+ I + V GR P + R G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 312 DPLSPF 317
D +PF
Sbjct: 121 DMAAPF 126
>ATMG01250.1 | RNA-directed DNA polymerase (reverse transcriptase) |
ChrM:310514-310882 FORWARD LENGTH=122 | 201606
Length = 122
Score = 64.7 bits (156), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 41/70 (58%)
Query: 290 MVVLINGRPGPSFNVSRGLRQGDPLSPFLFALAMEGLSRLLDSPDSPHKFIGFSIPRSSF 349
++ +ING P SRGLRQGDPLSP+LF L E LS L + G + +S
Sbjct: 10 LLFIINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSP 69
Query: 350 SINHLLFADD 359
INHLLFADD
Sbjct: 70 RINHLLFADD 79